Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 3.4e-65 251.5 129 100.0
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 2.2e-56 222.2 129 91.5
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 1.0e-53 213.4 127 87.4
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.9e-48 195.3 110 89.1
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 1.5e-47 193.0 129 79.8
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 3.8e-40 168.3 131 72.5
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 2.7e-38 162.2 130 70.8
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 4.7e-38 161.4 134 69.4
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 1.0e-37 160.2 134 69.4
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 1.4e-37 159.8 130 66.2
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 5.2e-37 157.9 131 68.7
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 1.8e-34 149.4 130 65.4
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 5.4e-34 147.9 126 65.9
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 7.0e-34 147.5 114 69.3
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 7.0e-34 147.5 115 67.0
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 7.0e-34 147.5 121 67.8
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 9.1e-34 147.1 133 61.7
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 1.2e-33 146.7 133 59.4
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 1.6e-33 146.4 139 59.0
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 1.6e-33 146.4 129 62.0
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.0e-33 146.0 126 65.1
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 2.7e-33 145.6 134 61.9
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 5.9e-33 144.4 128 63.3
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 5.9e-33 144.4 126 64.3
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 1.7e-32 142.9 135 60.0
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.7e-32 142.9 126 64.3
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 1.7e-32 142.9 117 65.8
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 2.3e-32 142.5 112 67.0
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 3.8e-32 141.7 103 69.9
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 3.8e-32 141.7 103 69.9
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 3.8e-32 141.7 131 60.3
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 5.0e-32 141.4 127 60.6
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.5e-31 139.8 114 64.9
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.9e-31 139.4 77 85.7
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.9e-31 139.4 98 69.4
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 2.5e-31 139.0 97 73.2
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 2.5e-31 139.0 97 73.2
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 2.5e-31 139.0 129 59.7
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 3.2e-31 138.7 111 66.7
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 4.2e-31 138.3 132 56.1
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 5.5e-31 137.9 129 56.6
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.6e-30 136.3 124 58.1
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 2.1e-30 136.0 94 72.3
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 2.8e-30 135.6 99 68.7
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 3.6e-30 135.2 103 68.9
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 3.6e-30 135.2 101 70.3
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 4.7e-30 134.8 127 59.8
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 4.7e-30 134.8 132 56.1
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 6.1e-30 134.4 94 71.3
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 6.1e-30 134.4 79 82.3
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 6.1e-30 134.4 107 74.8
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 8.0e-30 134.0 94 69.1
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 8.0e-30 134.0 154 53.2
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 8.0e-30 134.0 128 60.2
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 8.0e-30 134.0 128 60.2
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 8.0e-30 134.0 98 65.3
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.0e-29 133.7 97 66.0
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 1.0e-29 133.7 130 58.5
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 1.4e-29 133.3 95 71.6
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 1.4e-29 133.3 124 55.6
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 1.4e-29 133.3 97 66.0
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 1.8e-29 132.9 76 81.6
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 1.8e-29 132.9 128 60.2
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 1.8e-29 132.9 130 56.9
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 2.3e-29 132.5 95 71.6
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 4.0e-29 131.7 128 58.6
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 4.0e-29 131.7 88 73.9
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 4.0e-29 131.7 93 71.0
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 5.2e-29 131.3 95 70.5
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 5.2e-29 131.3 130 56.9
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 6.8e-29 131.0 92 71.7
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 6.8e-29 131.0 128 57.8
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 1.5e-28 129.8 96 63.5
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 2.0e-28 129.4 126 56.3
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 2.0e-28 129.4 112 60.7
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 2.0e-28 129.4 70 84.3
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 2.6e-28 129.0 128 57.0
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 2.6e-28 129.0 128 57.0
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 2.6e-28 129.0 78 80.8
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.4e-28 128.6 126 60.3
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 3.4e-28 128.6 95 68.4
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 3.4e-28 128.6 125 55.2
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 3.4e-28 128.6 126 57.1
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 5.7e-28 127.9 100 66.0
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 5.7e-28 127.9 96 66.7
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 1.3e-27 126.7 114 60.5
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.3e-27 126.7 91 70.3
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 1.3e-27 126.7 122 55.7
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 4.9e-27 124.8 94 64.9
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 8.3e-27 124.0 100 63.0
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 1.1e-26 123.6 115 59.1
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 1.4e-26 123.2 76 73.7
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 5.4e-26 121.3 159 47.8
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 1.7e-24 116.3 74 71.6
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 5.0e-24 114.8 112 52.7
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.0e-21 107.1 100 59.0
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 1.4e-21 106.7 122 49.2
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 2.3e-21 105.9 118 51.7
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 3.0e-21 105.5 56 83.9
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 2.6e-20 102.4 67 62.7
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 5.7e-20 101.3 78 67.9
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 5.7e-20 101.3 96 53.1
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 3.7e-19 98.6 121 38.0
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 9.2e-18 94.0 63 60.3
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.7e-16 89.7 101 59.4
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 5.0e-16 88.2 70 50.0
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 6.6e-16 87.8 100 59.0
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 1.4e-10 70.1 39 76.9
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 2.0e-09 66.2 34 85.3
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 2.3e-08 62.8 32 90.6
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 4.3e-07 58.5 40 72.5
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 2.1e-06 56.2 60 53.3
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 3.6e-06 55.5 62 53.2
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 4.7e-06 55.1 56 57.1


User provided reference genes

Program Settings