Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.6e-112 409.5 205 100.0
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 2.4e-68 262.7 325 48.6
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 6.5e-66 254.6 328 46.6
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.1e-63 245.0 317 48.6
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 4.2e-49 198.7 316 40.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.6e-48 196.8 316 40.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.0e-46 189.9 331 37.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-45 186.8 324 38.6
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.2e-45 186.4 338 37.9
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-43 179.9 325 38.2
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 5.9e-43 178.3 127 65.4
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.3e-42 177.2 136 60.3
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 8.5e-42 174.5 134 58.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 8.5e-42 174.5 103 80.6
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.1e-41 174.1 134 58.2
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.1e-41 174.1 136 60.3
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.9e-41 173.3 136 58.8
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 3.2e-41 172.6 131 60.3
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 4.2e-41 172.2 135 60.0
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.5e-41 171.8 237 45.6
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 7.2e-41 171.4 131 61.1
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-40 170.6 136 58.1
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.1e-40 169.9 136 56.6
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.7e-40 169.5 132 62.9
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 3.6e-40 169.1 133 58.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 4.7e-40 168.7 136 58.1
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 4.7e-40 168.7 136 59.6
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.1e-40 168.3 129 58.1
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 6.1e-40 168.3 131 63.4
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 7.9e-40 167.9 136 59.6
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.9e-40 167.9 136 58.8
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-39 167.5 132 62.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-39 167.5 132 60.6
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.4e-39 167.2 136 60.3
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.8e-39 166.8 136 57.4
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.0e-39 166.0 136 55.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.0e-39 166.0 136 55.9
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.9e-39 165.6 134 57.5
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 3.9e-39 165.6 135 57.8
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 5.2e-39 165.2 135 57.0
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 8.8e-39 164.5 132 59.1
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 8.8e-39 164.5 134 58.2
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 8.8e-39 164.5 135 57.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.1e-38 164.1 129 57.4
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 3.3e-38 162.5 136 57.4
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.3e-38 162.5 134 56.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.4e-38 162.2 136 57.4
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 9.7e-38 161.0 136 55.1
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 9.7e-38 161.0 135 55.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-37 160.6 135 54.8
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-37 160.6 135 55.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.3e-37 160.6 135 55.6
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.3e-37 160.6 136 58.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.3e-37 160.6 135 55.6
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.2e-37 159.8 134 55.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.2e-37 159.8 134 55.2
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.8e-37 159.5 137 55.5
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.8e-37 159.5 134 54.5
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.8e-37 159.5 136 55.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.8e-37 159.5 134 56.7
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.8e-37 159.5 134 54.5
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.7e-37 159.1 127 59.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 4.8e-37 158.7 129 58.9
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 4.8e-37 158.7 134 56.0
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 8.2e-37 157.9 130 56.9
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 8.2e-37 157.9 126 58.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.1e-36 157.5 136 54.4
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.4e-36 157.1 124 58.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.8e-36 156.8 135 54.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.8e-36 156.8 136 54.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.1e-36 156.0 130 56.2
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.1e-36 156.0 156 50.0
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 5.3e-36 155.2 136 55.1
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.3e-36 155.2 135 54.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 5.3e-36 155.2 130 55.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.0e-36 154.8 135 54.8
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 7.0e-36 154.8 129 55.8
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 9.1e-36 154.5 129 57.4
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.2e-35 154.1 127 55.1
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.2e-35 154.1 135 54.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.6e-35 153.7 131 55.0
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.6e-35 153.7 129 59.7
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.6e-35 152.9 133 51.9
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 3.5e-35 152.5 129 58.1
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 4.5e-35 152.1 129 58.1
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 4.5e-35 152.1 132 55.3
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.5e-35 152.1 129 55.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 7.7e-35 151.4 129 57.4
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 7.7e-35 151.4 129 54.3
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.3e-34 150.6 132 54.5
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.2e-34 149.8 134 53.0
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 3.8e-34 149.1 137 53.3
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 5.0e-34 148.7 129 54.3
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 6.5e-34 148.3 132 53.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.5e-33 147.1 132 53.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.5e-33 146.4 132 53.0
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.5e-33 146.4 132 53.0
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.5e-33 146.4 129 55.0
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 4.2e-33 145.6 135 48.1
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.2e-33 145.6 136 53.7
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.7e-32 142.9 125 56.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 4.7e-32 142.1 136 50.7
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 6.1e-32 141.7 129 51.2
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.0e-31 141.0 134 52.2
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-31 139.8 115 56.5
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 6.7e-31 138.3 136 51.5
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 8.8e-31 137.9 136 50.0
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 8.8e-31 137.9 135 48.1
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 8.8e-31 137.9 130 51.5
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.3e-30 136.0 125 52.8
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.4e-30 135.6 132 50.0
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 9.7e-30 134.4 134 48.5
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.3e-29 134.0 131 48.9
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.3e-29 134.0 134 47.8
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.3e-29 134.0 134 47.8
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-29 133.7 132 49.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.7e-29 133.7 132 49.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.2e-29 133.3 123 55.3
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 2.2e-29 133.3 130 47.7
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.8e-29 132.9 130 48.5
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 3.7e-29 132.5 132 47.0
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 3.7e-29 132.5 126 51.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 4.8e-29 132.1 132 47.0
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 4.8e-29 132.1 132 47.0
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 4.8e-29 132.1 132 47.0
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.1e-28 131.0 130 47.7
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.4e-28 130.6 126 50.8
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.4e-28 129.8 122 49.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 4.1e-28 129.0 132 47.7
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 5.3e-28 128.6 129 48.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 5.3e-28 128.6 109 56.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.2e-27 127.5 130 46.9
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.5e-27 125.9 120 50.0
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.3e-26 124.0 134 47.0
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.0e-26 122.1 133 47.4
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-25 120.9 133 46.6
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.9e-25 120.2 125 49.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.5e-25 119.8 133 45.9
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.2e-25 119.4 109 54.1
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.2e-24 117.5 163 39.3
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.2e-24 117.5 127 44.1
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 5.7e-22 108.6 134 42.5
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 7.5e-22 108.2 130 41.5
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 8.3e-21 104.8 136 44.1
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 9.1e-20 101.3 97 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.3e-18 96.7 128 42.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.5e-18 95.1 128 41.4
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.9e-17 93.6 128 40.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.8e-15 87.0 89 46.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.5e-14 81.6 130 39.2
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 9.8e-14 81.3 51 66.7
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.2e-11 74.3 53 62.3
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.5e-09 67.4 66 43.9
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 5.6e-09 65.5 53 58.5
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.7e-08 62.4 45 64.4
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.1e-08 62.0 186 34.4
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 3.0e-07 59.7 48 62.5


User provided reference genes

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