Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.6e-274 949.5 789 100.0
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 7.9e-104 382.5 839 53.8
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.9e-103 380.2 788 55.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 4.1e-100 370.2 791 53.0
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 2.6e-91 340.9 801 53.3
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 7.4e-86 322.8 642 48.8
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 2.1e-80 304.7 764 43.2
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 4.1e-76 290.4 797 46.3
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 5.9e-75 286.6 687 42.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 2.2e-66 258.1 805 47.5
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.9e-66 257.7 615 46.8
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.2e-62 245.7 495 45.5
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.8e-61 240.4 633 44.1
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.2e-59 235.7 635 42.8
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.8e-55 221.9 733 41.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.0e-55 221.1 637 50.5
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 6.8e-55 219.9 745 45.2
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.4e-52 212.2 816 42.8
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.6e-51 208.8 756 47.6
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.6e-51 208.8 756 47.6
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 5.9e-51 206.8 586 45.9
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 5.9e-51 206.8 378 49.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.1e-49 202.6 804 43.7
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 6.1e-48 196.8 633 52.6
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.8e-47 195.3 639 51.3
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 2.3e-47 194.9 667 45.9
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 5.2e-47 193.7 453 39.5
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.4e-46 190.7 453 40.4
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.3e-45 189.1 439 46.9
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.7e-45 188.7 633 37.1
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.2e-45 188.3 442 38.0
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 6.4e-45 186.8 447 38.9
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.2e-44 184.5 564 30.3
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.1e-44 184.1 601 29.6
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 5.4e-44 183.7 405 43.5
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 6.0e-43 180.3 569 50.6
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.3e-42 179.1 605 50.1
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.7e-42 178.7 791 40.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 6.6e-42 176.8 565 33.5
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.6e-42 176.4 635 48.7
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.6e-42 176.4 565 30.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.1e-41 176.0 634 40.2
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 4.7e-40 170.6 570 47.7
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.4e-39 169.1 619 41.5
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 3.1e-39 167.9 322 48.4
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 6.8e-39 166.8 425 38.4
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.2e-38 166.0 633 50.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.0e-38 165.2 332 45.8
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 3.4e-38 164.5 332 45.2
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 3.7e-37 161.0 339 33.0
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 8.3e-37 159.8 625 49.4
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 4.1e-36 157.5 634 44.8
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.6e-35 155.6 442 38.9
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.1e-35 155.2 631 53.2
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 6.0e-35 153.7 442 38.9
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.7e-34 152.1 609 44.5
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.1e-34 150.6 636 45.6
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 4.3e-33 147.5 440 31.1
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.3e-33 147.5 636 40.3
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 7.3e-33 146.7 441 36.5
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.2e-32 146.0 786 40.2
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 2.8e-32 144.8 637 49.0
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 8.1e-32 143.3 411 43.8
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.8e-31 142.1 632 48.1
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 2.3e-31 141.7 421 36.8
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.0e-30 138.7 637 40.5
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.6e-30 138.3 338 39.1
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 7.6e-30 136.7 626 43.5
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-29 136.0 631 53.4
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.3e-29 136.0 436 44.3
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.7e-29 135.6 616 42.4
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 3.7e-29 134.4 339 38.9
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.7e-29 134.4 618 46.6
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 4.9e-29 134.0 441 27.7
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.4e-28 132.5 505 38.6
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.1e-28 131.0 636 35.5
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 5.4e-28 130.6 613 34.9
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 7.1e-28 130.2 520 29.6
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.5e-27 127.9 325 35.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 6.0e-27 127.1 715 49.7
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.0e-26 126.3 717 52.6
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.0e-26 126.3 632 46.5
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-26 125.9 514 38.3
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.3e-26 125.2 443 32.5
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 5.1e-26 124.0 442 39.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 5.1e-26 124.0 442 39.8
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 5.1e-26 124.0 442 39.8
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.1e-25 122.9 688 34.2
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.9e-25 122.1 276 34.8
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 5.6e-25 120.6 625 31.4
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.8e-24 118.2 647 35.9
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 1.8e-23 115.5 520 31.7
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 8.9e-23 113.2 630 22.1
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.2e-22 112.8 650 39.5
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 2.2e-21 108.6 641 54.9
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 3.8e-21 107.8 495 25.7
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 6.4e-21 107.1 629 29.9
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 2.4e-20 105.1 312 28.2
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.4e-20 105.1 601 41.4
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.2e-20 104.8 150 54.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 5.4e-20 104.0 679 27.1
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.6e-19 102.4 267 35.2
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 6.0e-19 100.5 104 58.7
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-18 99.4 166 52.4
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 1.3e-16 92.8 339 34.5
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.8e-16 91.7 437 41.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.8e-16 90.9 442 31.2
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 4.8e-16 90.9 609 49.8
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.4e-15 88.6 95 61.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 4.0e-15 87.8 496 30.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 5.3e-15 87.4 482 31.1
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 9.0e-15 86.7 591 34.7
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.5e-14 85.9 151 39.1
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.6e-14 85.1 250 30.0
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 2.6e-14 85.1 71 70.4
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 7.6e-14 83.6 336 28.0
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 9.9e-14 83.2 669 32.6
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.9e-14 83.2 115 45.2
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.3e-13 82.8 398 41.7
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.2e-13 82.0 212 37.3
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 6.4e-13 80.5 505 26.5
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.4e-12 78.6 94 51.1
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 3.2e-12 78.2 276 27.2
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.6e-11 75.9 335 26.9
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.5e-11 74.7 647 45.1
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 6.0e-11 73.9 92 47.8
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 1.7e-10 72.4 161 39.8
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.1e-10 70.9 735 29.7
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.7e-10 70.1 711 48.0
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 8.7e-10 70.1 616 44.0
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.1e-09 69.7 432 33.3
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.5e-09 68.6 507 32.1
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 7.3e-09 67.0 276 31.5
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.3e-08 66.2 511 31.9
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.6e-08 65.9 416 28.6
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.8e-08 65.1 476 30.9
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 4.8e-08 64.3 635 47.4
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 6.2e-08 63.9 239 26.4
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 8.1e-08 63.5 55 63.6
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 8.1e-08 63.5 55 63.6
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.0e-07 61.2 137 37.2
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 9.0e-07 60.1 483 32.5
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 9.0e-07 60.1 339 30.4


User provided reference genes

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