Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.6e-239 832.4 425 100.0
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 5.6e-197 691.0 390 87.4
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 2.1e-196 689.1 389 87.4
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.3e-174 616.7 393 80.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.6e-172 609.8 394 77.9
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 3.1e-171 605.5 394 77.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 1.3e-169 600.1 395 77.5
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 8.2e-164 580.9 392 75.3
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 3.4e-162 575.5 394 76.9
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.1e-160 570.5 411 72.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 5.5e-160 568.2 394 73.9
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 7.6e-154 547.7 395 72.4
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.4e-147 526.9 307 86.3
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.6e-130 469.5 394 62.9
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.6e-127 459.1 395 62.5
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 5.2e-126 455.3 393 61.6
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.3e-121 440.7 394 61.7
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 5.5e-120 435.3 393 60.6
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 2.1e-119 433.3 388 60.1
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 2.7e-119 433.0 393 61.1
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.3e-118 429.9 385 60.0
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.3e-118 429.9 385 60.0
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.0e-118 429.5 394 57.9
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.2e-117 427.6 389 59.1
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.0e-117 426.8 391 60.9
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 2.0e-117 426.8 396 59.1
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 2.0e-117 426.8 394 59.6
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 2.0e-117 426.8 390 60.8
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 5.7e-117 425.2 419 56.8
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.5e-117 424.9 392 58.9
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.7e-116 423.7 387 61.0
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.7e-116 422.5 392 59.4
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 5.9e-114 415.2 395 58.7
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 7.7e-114 414.8 388 58.8
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 2.9e-113 412.9 387 58.7
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 6.6e-113 411.8 395 58.5
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.9e-112 410.2 389 59.4
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 3.3e-112 409.5 412 54.9
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 7.2e-112 408.3 387 60.2
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.2e-112 408.3 387 60.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.2e-112 408.3 387 60.2
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.2e-112 408.3 387 60.2
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.1e-111 406.8 383 59.0
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.8e-111 406.4 376 57.7
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.8e-111 406.4 367 60.5
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 6.1e-111 405.2 387 58.1
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.3e-110 403.3 387 59.9
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.0e-110 402.9 405 58.0
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 4.0e-110 402.5 387 57.9
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 5.2e-110 402.1 375 58.7
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 6.8e-110 401.7 423 54.6
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.6e-109 399.8 387 56.1
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.7e-108 397.1 401 55.6
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.7e-108 397.1 382 57.9
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.7e-108 396.0 385 56.1
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 8.3e-108 394.8 389 58.1
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.8e-107 393.7 385 55.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 5.4e-107 392.1 422 54.3
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.5e-106 389.4 385 57.4
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 5.9e-106 388.7 404 55.2
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.9e-104 383.6 277 71.5
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.6e-103 380.6 384 57.6
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 2.0e-101 373.6 387 55.6
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.2e-100 370.2 375 55.7
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.2e-100 370.2 385 55.3
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.1e-99 367.9 366 55.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.4e-99 367.5 423 54.1
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 3.9e-97 359.4 403 53.3
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.2e-95 354.4 389 54.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.1e-95 353.6 439 50.8
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.4e-94 350.9 412 49.5
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 5.2e-94 349.0 415 50.6
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 5.2e-94 349.0 405 50.9
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.2e-93 347.8 382 50.5
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 2.6e-93 346.7 371 55.8
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 9.8e-93 344.7 434 48.4
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 2.9e-92 343.2 396 54.0
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 8.3e-92 341.7 383 52.0
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.4e-91 340.1 394 49.5
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 4.1e-91 339.3 400 53.0
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 4.1e-91 339.3 377 52.8
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.2e-90 337.8 403 52.4
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 6.2e-87 325.5 379 49.3
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 5.2e-86 322.4 394 49.0
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 8.9e-86 321.6 387 49.1
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 3.4e-85 319.7 480 44.0
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 1.7e-84 317.4 382 47.9
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 2.9e-84 316.6 316 56.3
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.0e-81 308.1 375 50.1
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 3.0e-81 306.6 392 46.2
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 3.3e-80 303.1 375 48.3
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 5.6e-80 302.4 376 50.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.2e-79 301.2 383 46.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.1e-79 300.4 401 45.9
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 4.0e-78 296.2 396 46.2
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 5.2e-78 295.8 369 47.7
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 5.2e-78 295.8 307 56.0
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 4.4e-77 292.7 378 46.3
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.3e-76 291.2 394 45.7
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 6.4e-76 288.9 382 45.3
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 8.4e-76 288.5 382 45.3
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 1.9e-75 287.3 416 45.2
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 3.2e-75 286.6 363 49.9
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 5.4e-75 285.8 394 46.2
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.1e-73 279.3 381 43.8
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.3e-72 276.2 395 45.8
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.8e-70 270.8 354 48.6
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.8e-69 265.8 401 43.1
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 7.6e-69 265.4 386 43.8
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 9.3e-67 258.5 401 41.6
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.1e-66 257.3 397 43.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 6.6e-65 252.3 433 41.8
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.3e-63 248.1 355 45.4
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 6.2e-63 245.7 421 41.1
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.7e-60 237.7 253 51.4
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 6.4e-60 235.7 222 54.1
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.1e-58 230.7 222 53.6
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.9e-57 226.5 286 52.4
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 2.6e-53 213.8 161 70.8
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.0e-52 211.8 279 47.7
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 4.9e-52 209.5 265 49.4
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.0e-49 200.3 267 47.2
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 8.7e-49 198.7 171 53.2
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.5e-48 198.0 300 43.7
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 1.5e-45 188.0 208 47.6
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 9.3e-43 178.7 108 80.6
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.0e-33 148.7 161 45.3
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 9.1e-30 135.6 275 34.9
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.2e-29 135.2 191 39.3
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.6e-26 124.8 286 36.0
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.4e-25 121.7 286 31.5
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 2.0e-24 117.9 335 31.9
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.7e-24 116.3 85 67.1
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 9.7e-24 115.5 106 45.3
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.9e-20 104.0 68 75.0
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.2e-19 100.5 77 64.9
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 7.2e-11 72.8 73 52.1
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 1.5e-08 65.1 52 65.4


User provided reference genes

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