Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 5.5e-69 264.2 138 100.0
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.0e-50 202.6 139 77.0
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 7.0e-48 194.1 138 76.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 5.5e-45 184.5 137 71.5
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.0e-43 180.3 138 65.2
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.3e-41 171.0 138 62.3
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.4e-40 169.9 138 62.3
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 5.9e-39 164.5 140 65.7
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.5e-37 159.8 138 58.7
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.1e-36 156.0 138 60.1
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 3.6e-36 155.2 138 59.4
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.6e-36 155.2 132 59.1
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 3.0e-35 152.1 132 58.3
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.1e-32 143.7 139 53.2
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.0e-31 139.4 130 54.6
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 5.0e-30 134.8 138 53.6
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.5e-29 132.5 137 52.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.2e-29 131.7 121 54.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 5.5e-29 131.3 121 54.5
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 9.5e-29 130.6 121 54.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 9.5e-29 130.6 121 54.5
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 9.5e-29 130.6 122 52.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-28 130.2 134 52.2
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.1e-28 129.4 121 53.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.0e-28 127.5 121 52.9
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 8.0e-28 127.5 137 54.0
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 5.2e-27 124.8 126 49.2
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 8.9e-27 124.0 139 53.2
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.6e-26 122.5 133 50.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 3.4e-26 122.1 131 48.9
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 4.4e-26 121.7 128 48.4
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.2e-25 119.4 135 47.4
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.2e-25 119.4 125 54.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.9e-25 119.0 133 51.9
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.7e-25 118.6 138 49.3
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.4e-24 116.7 133 46.6
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.8e-24 116.3 125 50.4
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.8e-24 116.3 129 48.8
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.8e-24 116.3 135 48.9
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.4e-24 115.9 134 52.2
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.2e-24 115.5 132 49.2
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 4.1e-24 115.2 139 48.2
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.4e-24 114.8 135 48.1
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 7.0e-24 114.4 125 50.4
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.2e-23 113.6 132 47.7
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.0e-23 112.8 123 48.8
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.7e-23 112.5 128 48.4
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.5e-23 112.1 130 49.2
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.9e-23 111.3 135 47.4
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.9e-23 111.3 125 50.4
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 5.9e-23 111.3 133 48.1
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 7.8e-23 110.9 129 44.2
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.3e-22 110.2 136 46.3
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-22 110.2 135 45.9
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.7e-22 109.8 132 45.5
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.7e-22 109.8 127 43.3
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.0e-22 108.2 136 46.3
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.0e-22 108.2 111 54.1
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 8.6e-22 107.5 133 44.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 8.6e-22 107.5 134 42.5
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.1e-21 107.1 120 45.8
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.5e-21 106.7 135 44.4
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.9e-21 106.3 145 42.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.3e-21 105.5 123 46.3
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 5.6e-21 104.8 129 45.7
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 4.7e-20 101.7 124 42.7
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 8.0e-20 100.9 130 46.9
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.2e-18 97.1 125 44.0
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.0e-18 96.3 136 43.4
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 9.8e-18 94.0 129 38.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-17 93.6 131 47.3
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.3e-17 93.6 144 40.3
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.9e-17 92.4 123 41.5
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.7e-17 92.0 125 43.2
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.7e-17 92.0 134 47.8
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 3.7e-17 92.0 144 40.3
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 3.7e-17 92.0 135 42.2
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 4.9e-17 91.7 133 44.4
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 6.4e-17 91.3 86 59.3
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.4e-17 91.3 137 43.8
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 8.3e-17 90.9 113 39.8
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.9e-16 89.7 116 42.2
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.4e-16 89.4 133 41.4
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 7.0e-16 87.8 132 39.4
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.6e-15 86.7 96 45.8
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.7e-15 85.9 134 39.6
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.7e-15 85.9 111 45.9
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 2.7e-15 85.9 126 39.7
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.5e-15 85.5 139 41.0
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.5e-15 85.5 123 42.3
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.5e-15 85.5 106 45.3
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 3.5e-15 85.5 126 39.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 7.8e-15 84.3 123 43.9
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.3e-14 83.6 128 41.4
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.3e-14 83.6 111 45.0
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 2.3e-14 82.8 138 37.0
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 3.0e-14 82.4 114 40.4
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 8.6e-14 80.9 125 38.4
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.1e-13 80.5 111 43.2
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.9e-13 79.7 115 41.7
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.9e-13 79.7 119 42.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 5.6e-13 78.2 115 41.7
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 9.5e-13 77.4 115 40.0
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 9.5e-13 77.4 115 40.9
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 9.5e-13 77.4 115 40.0
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.6e-12 76.6 113 38.9
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.6e-12 76.6 110 40.9
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 2.1e-12 76.3 115 40.9
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-11 73.9 110 38.2
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.1e-11 73.9 110 38.2
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.4e-11 73.6 119 39.5
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.8e-11 73.2 106 43.4
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.8e-11 73.2 101 40.6
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-11 73.2 101 40.6
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.8e-11 73.2 129 36.4
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 2.3e-11 72.8 101 39.6
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.0e-11 72.0 112 40.2
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 5.2e-11 71.6 110 44.5
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 8.9e-11 70.9 110 40.9
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.0e-10 69.7 135 35.6
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 7.5e-10 67.8 118 38.1
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 2.2e-09 66.2 120 37.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.2e-09 66.2 136 34.6
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 3.7e-09 65.5 143 34.3
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.9e-08 63.2 135 33.3
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.9e-08 63.2 135 33.3
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 3.2e-08 62.4 123 31.7
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.2e-08 62.4 105 44.8
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 7.1e-08 61.2 110 34.5
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 7.8e-07 57.8 126 34.9
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 7.8e-07 57.8 145 35.2
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 1.7e-06 56.6 145 33.8
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 3.0e-06 55.8 135 28.1
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 6.6e-06 54.7 138 31.9
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 6.6e-06 54.7 147 32.0
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 8.6e-06 54.3 138 31.9
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 8.6e-06 54.3 136 31.6


User provided reference genes

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