Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 0.0e+00 1311.2 671 100.0
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 0.0e+00 1143.6 682 87.7
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 0.0e+00 1122.5 677 87.1
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 2.3e-306 1055.0 681 80.8
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.7e-296 1022.3 687 77.7
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.7e-296 1022.3 675 78.4
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 3.7e-296 1021.1 675 78.5
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 5.0e-293 1010.7 679 79.8
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.4e-290 1002.7 683 77.7
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.4e-287 992.6 684 76.9
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 5.3e-258 894.4 679 69.4
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 3.5e-254 881.7 681 68.0
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 7.6e-249 864.0 681 66.7
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 8.4e-248 860.5 725 63.7
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.2e-246 856.7 684 66.5
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 6.7e-245 850.9 682 65.5
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.8e-243 845.5 607 74.3
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 4.8e-243 844.7 675 66.5
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 3.1e-242 842.0 680 64.7
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.2e-240 835.9 680 65.7
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.2e-240 835.9 681 66.5
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.9e-240 835.5 673 65.7
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 8.4e-240 833.9 676 64.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.1e-238 829.3 681 65.1
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.9e-237 825.1 676 64.8
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 1.5e-236 823.2 673 64.0
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.2e-235 819.3 681 64.5
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 3.7e-235 818.5 681 64.3
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 4.8e-235 818.1 685 63.9
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 6.3e-235 817.8 673 63.7
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.2e-233 813.5 682 63.6
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 3.4e-233 812.0 668 64.8
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.4e-233 812.0 688 64.4
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.5e-231 805.8 673 63.3
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 3.2e-231 805.4 686 63.6
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 4.2e-231 805.1 681 62.1
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 3.6e-230 802.0 678 63.4
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 6.1e-230 801.2 688 62.1
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 1.0e-229 800.4 683 63.0
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.8e-227 791.6 688 63.8
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 8.2e-227 790.8 672 62.2
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.7e-224 783.1 686 61.7
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.9e-223 779.6 710 59.9
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 4.7e-222 775.0 681 60.6
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 6.1e-222 774.6 675 60.7
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 3.0e-221 772.3 685 61.8
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.4e-218 763.5 684 60.2
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.1e-218 762.3 673 60.5
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 5.9e-217 758.1 602 66.1
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.0e-216 757.3 701 59.2
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 5.5e-215 751.5 677 59.4
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 2.1e-214 749.6 677 59.2
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 8.8e-213 744.2 692 57.4
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 3.8e-208 728.8 717 55.2
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.6e-206 722.2 677 56.7
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 8.0e-206 721.1 685 56.8
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 8.8e-205 717.6 723 54.2
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.0e-204 716.5 686 59.0
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 7.5e-204 714.5 665 56.7
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 4.8e-203 711.8 604 63.1
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.8e-202 709.9 685 56.2
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.1e-202 709.1 683 57.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 4.1e-202 708.8 485 72.6
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.7e-201 706.1 683 57.1
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 9.4e-199 697.6 685 56.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.6e-198 695.7 686 56.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 4.0e-197 692.2 679 57.3
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 5.2e-197 691.8 676 56.7
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 6.8e-197 691.4 686 56.9
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 6.8e-197 691.4 663 54.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.5e-196 690.3 686 56.7
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.5e-196 690.3 684 56.4
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 2.2e-195 686.4 684 56.0
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.2e-195 686.4 632 57.8
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 6.3e-195 684.9 678 56.8
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.5e-193 679.1 681 55.7
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 8.6e-192 674.5 679 56.0
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.3e-191 672.5 685 54.9
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.8e-189 666.8 605 60.2
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.5e-188 663.7 658 56.8
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 2.6e-188 662.9 639 57.3
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.4e-188 662.5 669 56.1
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 5.7e-188 661.8 681 54.2
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 7.8e-185 651.4 670 54.0
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 4.3e-183 645.6 627 56.3
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 6.4e-179 631.7 584 61.1
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 3.0e-176 622.9 718 51.3
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 5.0e-176 622.1 621 54.4
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 8.6e-176 621.3 672 52.8
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 5.6e-175 618.6 672 50.9
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.2e-171 606.7 672 51.2
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 3.3e-167 592.8 639 54.5
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 4.1e-162 575.9 371 74.1
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 4.0e-157 559.3 600 53.3
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 2.2e-139 500.4 607 48.9
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.4e-138 497.7 281 87.2
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.4e-133 481.1 494 51.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 3.4e-132 476.5 708 42.7
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 7.1e-130 468.8 299 72.9
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 2.5e-122 443.7 709 42.2
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-114 418.3 359 57.7
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 7.5e-79 299.3 221 71.5
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.4e-53 214.5 282 48.6
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.9e-50 204.9 205 61.5
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-43 182.2 100 84.0
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.3e-42 177.6 100 82.0
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.6e-41 174.1 100 80.0
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-39 169.1 96 80.2
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.6e-33 148.7 470 30.2
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-30 139.0 81 77.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.8e-30 137.5 81 79.0
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 3.4e-15 87.8 329 25.2
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.1e-13 82.8 47 74.5
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.2e-13 80.9 62 64.5
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.3e-11 75.1 180 32.8
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.3e-10 71.2 70 54.3


User provided reference genes

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