Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 5.7e-42 173.7 80 100.0
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.2e-31 139.4 69 89.9
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.2e-31 139.4 69 89.9
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.2e-31 139.4 69 89.9
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.5e-31 139.0 69 89.9
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 1.5e-31 139.0 69 89.9
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 3.4e-31 137.9 69 88.4
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.5e-31 137.5 69 89.9
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 5.9e-31 137.1 69 88.4
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 1.0e-30 136.3 69 88.4
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 1.0e-30 136.3 63 96.8
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.3e-30 136.0 69 87.0
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.7e-30 135.6 69 87.0
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.7e-30 135.6 63 93.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.7e-30 135.6 69 87.0
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 1.7e-30 135.6 69 87.0
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 1.7e-30 135.6 68 86.8
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.7e-30 135.6 69 87.0
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 1.7e-30 135.6 69 88.4
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 2.2e-30 135.2 69 87.0
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 2.2e-30 135.2 69 87.0
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 2.9e-30 134.8 69 87.0
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.9e-30 134.8 69 87.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 2.9e-30 134.8 63 93.7
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 3.8e-30 134.4 63 93.7
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.8e-30 134.4 69 85.5
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 3.8e-30 134.4 63 92.1
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.8e-30 134.4 63 95.2
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.8e-30 134.4 63 92.1
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.8e-30 134.4 69 84.1
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.0e-30 134.0 63 93.7
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 5.0e-30 134.0 63 95.2
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 5.0e-30 134.0 63 93.7
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 5.0e-30 134.0 63 93.7
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 5.0e-30 134.0 69 85.5
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 6.5e-30 133.7 63 93.7
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 6.5e-30 133.7 69 85.5
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 6.5e-30 133.7 63 93.7
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 6.5e-30 133.7 63 93.7
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.5e-30 133.7 69 85.5
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.5e-30 133.7 69 85.5
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 6.5e-30 133.7 69 85.5
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 6.5e-30 133.7 63 93.7
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 8.5e-30 133.3 63 93.7
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 8.5e-30 133.3 63 92.1
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 8.5e-30 133.3 63 92.1
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 8.5e-30 133.3 69 85.5
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.5e-30 133.3 69 85.5
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.5e-30 133.3 69 85.5
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 8.5e-30 133.3 69 85.5
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.1e-29 132.9 69 85.5
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.4e-29 132.5 63 92.1
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.4e-29 132.5 69 82.6
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.9e-29 132.1 63 92.1
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.9e-29 132.1 63 92.1
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.9e-29 132.1 63 92.1
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.5e-29 131.7 69 84.1
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 3.2e-29 131.3 63 92.1
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 3.2e-29 131.3 63 92.1
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 3.2e-29 131.3 63 92.1
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 3.2e-29 131.3 69 85.5
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 3.2e-29 131.3 63 90.5
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 4.2e-29 131.0 63 90.5
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 4.2e-29 131.0 63 90.5
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.5e-29 130.6 63 90.5
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 7.2e-29 130.2 63 93.7
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.2e-29 130.2 63 88.9
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 7.2e-29 130.2 67 86.6
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 7.2e-29 130.2 69 82.6
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 7.2e-29 130.2 69 81.2
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 9.4e-29 129.8 68 83.8
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 9.4e-29 129.8 63 88.9
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 1.2e-28 129.4 69 81.2
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.2e-28 129.4 69 84.1
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 1.2e-28 129.4 69 81.2
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 2.1e-28 128.6 63 92.1
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 2.1e-28 128.6 69 81.2
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-28 128.6 63 87.3
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.7e-28 128.3 81 75.3
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.7e-28 128.3 63 85.7
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 2.7e-28 128.3 63 85.7
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 3.6e-28 127.9 63 90.5
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 4.6e-28 127.5 69 81.2
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 7.9e-28 126.7 69 79.7
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 7.9e-28 126.7 69 81.2
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.0e-27 126.3 63 87.3
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.0e-27 126.3 69 82.6
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.0e-27 126.3 63 88.9
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.0e-27 126.3 63 85.7
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.0e-27 126.3 63 85.7
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.8e-27 125.6 57 96.5
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 2.3e-27 125.2 68 75.0
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.7e-27 123.6 69 79.7
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 1.5e-26 122.5 69 78.3
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.3e-26 121.3 60 88.3
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 4.3e-26 120.9 63 79.4
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 4.3e-26 120.9 69 76.8
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 7.4e-26 120.2 69 76.8
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 2.2e-25 118.6 69 75.4
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 2.2e-25 118.6 69 75.4
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 2.2e-25 118.6 69 75.4
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 2.2e-25 118.6 69 75.4
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 2.2e-25 118.6 60 80.0
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 2.2e-25 118.6 63 79.4
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 2.8e-25 118.2 69 75.4
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 2.8e-25 118.2 69 75.4
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 2.8e-25 118.2 69 73.9
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.8e-25 118.2 63 76.2
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 4.8e-25 117.5 69 73.9
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 8.2e-25 116.7 69 73.9
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 8.2e-25 116.7 58 84.5
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 5.3e-24 114.0 60 78.3
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.5e-23 112.5 63 74.6
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 3.4e-23 111.3 63 73.0
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 5.0e-22 107.5 56 82.1
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 4.2e-21 104.4 60 75.0
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 5.1e-19 97.4 60 66.7
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 1.5e-18 95.9 50 84.0
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 5.7e-18 94.0 60 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 2.2e-17 92.0 59 61.0
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-13 77.8 72 47.2
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 3.0e-11 71.6 45 71.1
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.1e-10 69.7 44 68.2
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.0e-10 68.9 36 83.3
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 3.3e-10 68.2 37 81.1
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 4.4e-10 67.8 47 61.7
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 5.7e-10 67.4 31 93.5
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 3.7e-09 64.7 56 53.6
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.1e-08 60.1 27 92.6
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 6.5e-06 53.9 60 45.0


User provided reference genes

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