Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 0.0e+00 2658.6 1321 100.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 2147.5 1316 82.0
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 2097.0 1313 81.4
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 2087.0 1313 81.1
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1759.2 1315 69.3
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1749.6 1317 68.3
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1659.0 1349 63.4
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1659.0 1349 63.4
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1623.6 1245 67.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1608.6 1319 64.2
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1603.2 1247 66.2
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1297.3 774 83.1
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 1228.8 940 66.0
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1174.5 1374 48.0
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1160.6 1366 48.0
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1095.5 1378 46.9
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 2.0e-301 1039.6 1322 45.2
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 4.9e-300 1035.0 1375 44.7
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 2.7e-298 1029.2 1383 44.8
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 2.8e-295 1019.2 1260 46.5
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 3.4e-293 1012.3 1272 46.7
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 5.8e-293 1011.5 1279 45.3
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 1.9e-288 996.5 1275 46.4
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 3.1e-286 989.2 1369 42.7
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-283 980.3 1278 44.8
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.1e-282 976.5 1278 44.8
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.9e-282 974.5 1278 45.0
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.8e-281 973.4 1297 44.9
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.7e-281 971.1 1283 44.4
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 2.5e-280 969.5 1272 44.6
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 4.0e-278 962.2 1289 43.8
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 1.5e-277 960.3 1272 44.6
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.8e-276 955.7 1267 44.5
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.5e-272 943.7 1344 42.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.3e-272 942.6 1271 43.7
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 7.6e-269 931.4 1269 43.7
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 9.3e-267 924.5 1292 42.6
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 2.1e-266 923.3 1331 41.8
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.1e-259 901.0 1306 42.2
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.1e-259 901.0 1305 42.1
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.0e-257 894.4 1281 41.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 8.2e-255 884.8 1317 40.3
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 6.1e-250 868.6 1292 40.8
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 1.1e-246 857.8 1275 40.9
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 2.9e-244 849.7 1354 39.7
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.6e-242 844.0 1264 40.3
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.7e-239 833.9 1328 39.2
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 7.7e-237 825.1 1283 41.0
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 2.9e-228 796.6 1348 38.4
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 5.0e-228 795.8 1315 38.1
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 1.9e-227 793.9 1348 38.3
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.2e-226 791.2 1293 38.6
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.6e-226 790.8 1299 38.1
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 2.1e-226 790.4 1282 39.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 3.6e-226 789.6 1328 38.9
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 5.7e-224 782.3 1328 38.6
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 4.6e-213 746.1 1327 37.2
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 3.0e-212 743.4 1295 38.7
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 4.7e-210 736.1 1614 32.3
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 6.2e-210 735.7 1356 34.9
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.8e-208 729.2 1137 39.1
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 9.8e-208 728.4 1269 38.2
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 2.4e-206 723.8 1323 36.7
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 3.5e-205 719.9 815 47.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 2.8e-202 710.3 1252 37.3
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.6e-202 709.9 992 44.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 6.8e-201 705.7 1343 36.2
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 2.5e-195 687.2 1296 36.4
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 9.5e-195 685.3 1287 37.2
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 9.9e-192 675.2 1313 35.0
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 1.4e-190 671.4 1278 37.0
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 5.1e-188 662.9 1387 33.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.1e-187 661.8 1337 35.8
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 5.6e-187 659.4 1281 36.1
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.6e-186 657.9 1284 36.5
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 4.7e-186 656.4 1302 34.6
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.4e-185 654.8 1348 34.9
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.4e-184 650.2 1327 35.6
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 9.9e-184 648.7 1284 35.8
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 3.8e-183 646.7 1287 35.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 4.2e-182 643.3 1313 35.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 5.4e-182 642.9 1304 34.9
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 9.3e-182 642.1 1301 34.5
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.2e-181 641.7 1316 34.8
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.3e-180 638.3 1293 35.5
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.0e-172 612.1 1305 33.8
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 3.0e-172 610.5 637 49.5
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 9.9e-168 595.5 671 48.0
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 3.8e-167 593.6 680 45.4
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 4.6e-165 586.6 1423 31.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.4e-161 574.3 1309 33.2
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.6e-160 570.9 1345 32.3
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 8.5e-143 512.7 1304 31.7
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.1e-142 512.3 1262 32.2
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 3.6e-141 507.3 890 39.3
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 4.2e-118 430.6 898 31.4
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.1e-105 387.5 424 46.7
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 1.1e-94 352.8 627 39.7
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.7e-82 312.4 677 32.1
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.1e-81 309.7 239 69.5
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.2e-80 306.2 771 33.1
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.2e-80 306.2 897 27.8
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 2.5e-78 298.5 578 34.6
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 7.3e-70 270.4 557 37.0
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 9.6e-70 270.0 536 31.5
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 4.8e-61 241.1 455 31.9
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.5e-59 236.1 130 84.6
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.4e-57 229.6 636 29.1
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 3.9e-55 221.5 825 23.8
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.6e-53 216.1 1216 24.8
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.6e-48 199.5 113 85.8
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 6.2e-45 187.6 150 61.3
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 3.1e-44 185.3 671 24.9
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 9.0e-44 183.7 328 39.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.6e-27 129.0 315 34.6
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.7e-13 82.0 259 31.7
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 8.2e-13 80.9 92 45.7
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.7e-10 73.2 59 61.0
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 5.5e-09 68.2 37 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 5.2e-07 61.6 94 42.6


User provided reference genes

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