Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15496 Trifolium pratense HOM05D002685 ORTHO05D001487 2.3e-137 492.7 333 100.0
TPR.G2897 Trifolium pratense HOM05D002685 ORTHO05D001487 3.6e-98 362.5 373 75.3
Medtr7g022790 Medicago truncatula HOM05D002685 ORTHO05D001487 1.2e-64 251.1 421 56.3
Medtr7g022490 Medicago truncatula HOM05D002685 ORTHO05D001487 2.6e-64 250.0 421 56.5
Ca_07157_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 9.2e-54 214.9 375 57.3
TPR.G38293 Trifolium pratense HOM05D002685 ORTHO05D001487 7.8e-53 211.8 299 63.2
Psat3g186840 Pisum sativum HOM05D002685 ORTHO05D001487 2.3e-52 210.3 363 46.6
Ca_07143_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 6.8e-49 198.7 391 50.4
TPR.G27398 Trifolium pratense HOM05D002685 ORTHO05D001487 2.9e-39 166.8 92 92.4
Psat3g186880 Pisum sativum HOM05D002685 ORTHO05D001487 2.1e-37 160.6 371 42.9
Psat3g186800 Pisum sativum HOM05D002685 ORTHO05D001487 1.5e-35 154.5 193 53.4
Lj1g0010375 Lotus japonicus HOM05D002685 ORTHO05D001487 9.3e-30 135.2 430 40.9
Lalb_Chr10g0092001 Lupinus albus HOM05D002685 ORTHO05D001487 5.4e-22 109.4 371 32.9
Glyma.18G284900 Glycine max HOM05D002685 ORTHO05D001487 9.3e-22 108.6 343 38.2
Glyma.18G285100 Glycine max HOM05D002685 ORTHO05D001487 4.6e-21 106.3 373 40.5
Phvul.008G016500 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 9.6e-19 98.6 360 33.3
Psat3g186080 Pisum sativum HOM05D002685 ORTHO05D001487 1.4e-17 94.7 131 51.1
CSS0035629 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 3.1e-17 93.6 374 27.3
Prupe.1G221500 Prunus persica HOM05D002685 ORTHO05D001487 2.6e-16 90.5 368 29.9
Phvul.008G016600 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 3.4e-16 90.1 350 28.6
VMungo1383G1702 Vigna mungo HOM05D002685 ORTHO05D001487 3.4e-16 90.1 339 28.6
Sabra03G0122800 Salix brachista HOM05D002685 ORTHO05D001487 7.6e-16 89.0 380 27.9
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 2.9e-15 87.0 368 27.2
Glyma.02G096400 Glycine max HOM05D002685 ORTHO05D001487 3.8e-15 86.7 342 37.4
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 8.4e-15 85.5 382 28.0
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 4.2e-14 83.2 371 26.1
vmacro01042 Vaccinium macrocarpon HOM05D002685 ORTHO05D001487 7.1e-14 82.4 383 27.4
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.7e-13 80.5 347 31.4
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.0e-12 78.6 347 30.8
Haze_12458 Corylus avellana HOM05D002685 ORTHO05D001487 1.3e-12 78.2 377 28.9
arahy.Tifrunner.gnm1.ann1.D7MIWJ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.8e-12 77.8 330 43.0
arahy.Tifrunner.gnm1.ann1.G65IU1 Arachis hypogaea HOM05D002685 ORTHO05D001487 1.8e-12 77.8 330 43.0
CsaV3_4G002950 Cucumis sativus L. HOM05D002685 ORTHO05D001487 2.3e-12 77.4 366 28.4
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 2.3e-12 77.4 347 32.9
CAN.G65.93 Capsicum annuum HOM05D002685 ORTHO05D001487 3.0e-12 77.0 348 31.9
CiPaw.05G105900 Carya illinoinensis HOM05D002685 ORTHO05D001487 3.0e-12 77.0 140 40.0
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 5.1e-12 76.3 386 26.2
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 6.7e-12 75.9 386 27.5
VMungo1383G0720 Vigna mungo HOM05D002685 ORTHO05D001487 1.1e-11 75.1 354 28.2
Cfa009398 Carpinus fangiana HOM05D002685 ORTHO05D001487 1.5e-11 74.7 377 28.4
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 1.5e-11 74.7 313 27.8
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 1.5e-11 74.7 173 38.2
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 1.9e-11 74.3 125 41.6
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 1.9e-11 74.3 165 35.2
Gohir.D10G237708 Gossypium hirsutum HOM05D002685 ORTHO05D001487 4.3e-11 73.2 119 40.3
Gorai.001G075700 Gossypium raimondii HOM05D002685 ORTHO05D001487 5.7e-11 72.8 119 41.2
TWI75G0855 Tripterygium wilfordii HOM05D002685 ORTHO05D001487 7.4e-11 72.4 359 30.4
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 9.6e-11 72.0 380 33.9
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.3e-10 71.6 140 37.1
PSO478G3563 Papaver somniferum HOM05D002685 ORTHO05D001487 1.3e-10 71.6 344 26.5
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 2.1e-10 70.9 403 27.3
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 3.7e-10 70.1 325 32.6
TAR365G1211 Trochodendron aralioides HOM05D002685 ORTHO05D001487 3.7e-10 70.1 149 36.2
CDE05G2679 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 4.8e-10 69.7 101 42.6
PSO017G3972 Papaver somniferum HOM05D002685 ORTHO05D001487 8.2e-10 68.9 134 38.8
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 1.1e-09 68.6 388 32.7
Cc09_g08480 Coffea canephora HOM05D002685 ORTHO05D001487 1.4e-09 68.2 369 30.6
Actinidia25109 Actinidia chinensis HOM05D002685 ORTHO05D001487 1.8e-09 67.8 166 34.9
MBI07_g36513_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 2.4e-09 67.4 123 39.0
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 2.4e-09 67.4 204 33.8
CDE05G0851 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 3.1e-09 67.0 76 52.6
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 3.1e-09 67.0 178 34.3
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 4.1e-09 66.6 177 33.3
DCAR_024650 Daucus carota HOM05D002685 ORTHO05D001487 4.1e-09 66.6 169 32.0
Nitab4.5_0000337g0100 Nicotiana tabacum HOM05D002685 ORTHO05D001487 4.1e-09 66.6 375 29.9
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 4.1e-09 66.6 380 28.4
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 6.9e-09 65.9 121 38.0
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 9.0e-09 65.5 374 29.9
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 9.0e-09 65.5 152 34.9
PGR119G2530 Punica granatum HOM05D002685 ORTHO05D001487 1.2e-08 65.1 387 24.8
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 1.2e-08 65.1 328 26.5
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 1.2e-08 65.1 386 28.0
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 3.4e-08 63.5 364 28.8
SalBow2G0376 Salvia bowleyana HOM05D002685 ORTHO05D001487 4.5e-08 63.2 321 28.3
Sc14g0009180 Simmondsia chinensis HOM05D002685 ORTHO05D001487 4.5e-08 63.2 170 31.2
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 7.6e-08 62.4 350 27.4
Ciclev10031823m.g Citrus clementina HOM05D002685 ORTHO05D001487 7.6e-08 62.4 357 36.1
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 2.2e-07 60.8 375 24.8
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 2.2e-07 60.8 174 35.1
SalBow2G0840 Salvia bowleyana HOM05D002685 ORTHO05D001487 2.2e-07 60.8 354 26.3
AUR62028890 Chenopodium quinoa HOM05D002685 ORTHO05D001487 3.8e-07 60.1 163 33.1
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 3.8e-07 60.1 115 37.4
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 5.0e-07 59.7 115 38.3
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 6.5e-07 59.3 115 38.3
Migut.K01013 Erythranthe guttata HOM05D002685 ORTHO05D001487 8.4e-07 58.9 186 33.3
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.1e-06 58.5 87 40.2
Lj2P1097T8 Lonicera japonica HOM05D002685 ORTHO05D001487 1.4e-06 58.2 57 54.4
Nn8g41102 Nelumbo nucifera HOM05D002685 ORTHO05D001487 1.4e-06 58.2 373 25.2
Nitab4.5_0003401g0080 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.4e-06 58.2 187 31.0
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 1.9e-06 57.8 169 27.8
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 1.9e-06 57.8 149 32.9
Dinv11706 Davidia involucrata HOM05D002685 ORTHO05D001487 4.2e-06 56.6 141 32.6
TAR622G0718 Trochodendron aralioides HOM05D002685 ORTHO05D001487 7.2e-06 55.8 63 46.0
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 9.3e-06 55.5 156 30.8


User provided reference genes

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