Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 4.2e-74 281.2 133 100.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.0e-60 235.7 133 80.5
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.6e-60 235.3 133 79.7
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.0e-59 231.1 133 77.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.6e-57 226.1 133 75.2
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 8.8e-56 220.3 133 72.9
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.5e-55 219.5 133 72.2
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 2.0e-55 219.2 133 72.2
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.0e-55 219.2 133 75.2
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 4.3e-55 218.0 133 72.9
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.7e-55 217.6 131 77.1
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 5.7e-55 217.6 133 74.4
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.4e-55 217.2 133 71.4
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.3e-54 216.5 133 73.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 1.7e-54 216.1 133 70.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 8.2e-54 213.8 133 73.7
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.1e-53 213.4 134 70.9
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.8e-53 212.6 133 69.9
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 6.9e-53 210.7 133 67.7
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.2e-52 209.9 133 75.2
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 7.7e-52 207.2 132 68.2
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 3.8e-51 204.9 133 66.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 8.5e-51 203.8 133 67.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.2e-50 201.8 124 70.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 4.2e-50 201.4 133 64.7
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.2e-50 201.4 133 67.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 9.4e-50 200.3 133 64.7
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 9.4e-50 200.3 133 64.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.6e-49 199.5 133 67.7
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 4.7e-49 198.0 133 65.4
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.4e-48 196.4 137 66.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.4e-48 196.4 133 63.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.4e-48 196.4 127 67.7
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.3e-48 195.7 133 64.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 3.0e-48 195.3 133 66.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 3.0e-48 195.3 134 64.2
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.0e-48 195.3 133 64.7
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.0e-48 195.3 135 65.9
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 8.8e-48 193.7 133 64.7
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 8.8e-48 193.7 136 64.7
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-47 193.4 133 63.9
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.3e-47 191.8 133 64.7
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.3e-47 191.8 133 64.7
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.7e-47 191.0 133 61.7
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 7.4e-47 190.7 133 62.4
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 9.7e-47 190.3 133 65.4
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 9.7e-47 190.3 133 62.4
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.3e-46 189.9 134 64.2
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.7e-46 189.5 135 64.4
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.7e-46 189.5 135 64.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.2e-46 189.1 132 62.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.2e-46 189.1 133 62.4
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.8e-46 188.7 113 73.5
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.8e-46 188.7 133 62.4
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 3.7e-46 188.3 135 65.2
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 4.8e-46 188.0 133 61.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 8.2e-46 187.2 135 63.7
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 8.2e-46 187.2 133 62.4
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.1e-45 186.8 134 62.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.4e-45 186.4 134 63.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.4e-45 186.4 133 62.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.8e-45 186.0 133 60.2
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.1e-45 185.3 138 63.8
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.5e-44 183.0 134 60.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 2.0e-44 182.6 133 60.9
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.6e-44 182.2 145 57.9
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.6e-44 182.2 111 73.0
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.9e-44 181.0 134 59.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 5.9e-44 181.0 134 59.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.9e-44 181.0 135 61.5
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 7.7e-44 180.6 133 59.4
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.3e-43 179.9 134 61.2
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.2e-43 179.1 143 55.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.2e-43 179.1 133 60.2
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.2e-43 179.1 112 70.5
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 2.2e-43 179.1 133 59.4
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.9e-43 178.7 134 57.5
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.9e-43 178.7 133 59.4
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.0e-43 177.9 133 57.9
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.0e-43 177.9 132 59.8
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 5.0e-43 177.9 134 59.0
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 6.5e-43 177.6 132 58.3
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 6.5e-43 177.6 132 58.3
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 6.5e-43 177.6 134 61.2
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.1e-42 176.8 119 65.5
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 5.5e-42 174.5 131 61.8
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 7.2e-42 174.1 133 58.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 7.2e-42 174.1 134 61.2
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 9.4e-42 173.7 133 58.6
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 9.4e-42 173.7 133 58.6
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.2e-41 173.3 128 57.0
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.6e-41 172.9 111 66.7
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.6e-41 172.9 132 55.3
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 6.1e-41 171.0 131 58.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 6.1e-41 171.0 111 69.4
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 8.0e-41 170.6 124 62.1
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.0e-41 170.6 134 59.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.0e-40 170.2 145 58.6
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.3e-40 169.1 129 58.1
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.5e-39 166.4 134 54.5
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.3e-39 165.2 131 58.0
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.3e-39 165.2 131 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.3e-38 163.3 133 57.9
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.1e-37 160.2 136 50.7
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.8e-37 159.5 125 59.2
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.8e-37 159.5 114 58.8
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.4e-37 159.1 113 63.7
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 2.4e-37 159.1 136 51.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 5.3e-37 157.9 135 58.5
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.0e-36 156.0 111 62.2
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.5e-35 150.6 120 56.7
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 8.5e-35 150.6 111 57.7
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.9e-34 149.4 136 49.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.2e-34 148.7 96 72.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 9.4e-34 147.1 126 52.4
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.0e-32 143.7 112 58.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.0e-31 139.4 140 48.6
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-30 136.3 122 50.0
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-30 136.0 122 50.0
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-30 136.0 122 50.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-30 136.0 122 50.0
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.8e-30 135.6 122 50.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-29 133.7 122 49.2
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-28 129.0 116 50.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.3e-27 126.7 88 64.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 8.5e-27 124.0 133 46.6
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.2e-26 122.1 90 57.8
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 3.4e-23 112.1 74 60.8
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.3e-18 95.5 122 40.2
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 7.2e-18 94.4 135 36.3
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.5e-18 94.0 114 43.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 4.0e-16 88.6 125 36.0
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 3.2e-13 79.0 136 34.6
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 3.3e-10 68.9 42 66.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.8e-08 63.2 108 31.5
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-06 57.0 42 54.8


User provided reference genes

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