Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 7.5e-47 190.3 103 100.0
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 2.6e-39 165.2 103 85.4
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 6.6e-35 150.6 103 83.5
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 1.5e-34 149.4 103 78.6
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 8.1e-33 143.7 103 74.8
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 1.2e-31 139.8 106 77.4
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.5e-31 139.4 103 73.8
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 1.3e-30 136.3 102 72.5
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 4.9e-30 134.4 102 71.6
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 2.4e-29 132.1 104 71.2
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 1.2e-28 129.8 103 68.9
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 1.0e-27 126.7 101 69.3
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 6.2e-25 117.5 99 65.7
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 6.8e-24 114.0 102 62.7
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 2.9e-22 108.6 101 63.4
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 3.8e-22 108.2 99 61.6
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 4.9e-22 107.8 104 61.5
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 1.1e-21 106.7 99 60.6
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 1.4e-21 106.3 103 57.3
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 3.2e-21 105.1 87 63.2
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 9.2e-21 103.6 99 59.6
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 9.2e-21 103.6 99 58.6
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 1.2e-20 103.2 100 60.0
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 3.5e-20 101.7 102 56.9
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 4.6e-20 101.3 102 55.9
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 7.8e-20 100.5 82 67.1
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 2.3e-19 99.0 98 57.1
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 6.6e-19 97.4 104 61.5
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 6.6e-19 97.4 91 61.5
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 8.7e-19 97.1 98 61.2
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 8.7e-19 97.1 102 54.9
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.5e-18 96.3 88 61.4
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 1.5e-18 96.3 96 60.4
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.9e-18 95.9 80 63.8
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 1.9e-18 95.9 87 65.5
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 1.9e-18 95.9 102 57.8
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 2.5e-18 95.5 89 60.7
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 2.5e-18 95.5 98 60.2
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 3.3e-18 95.1 99 60.6
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 3.3e-18 95.1 98 55.1
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 4.3e-18 94.7 82 64.6
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 4.3e-18 94.7 95 60.0
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 5.6e-18 94.4 84 61.9
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 5.6e-18 94.4 106 57.5
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 7.3e-18 94.0 96 59.4
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 9.6e-18 93.6 99 58.6
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 1.3e-17 93.2 102 56.9
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 1.3e-17 93.2 96 59.4
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 1.3e-17 93.2 99 58.6
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 2.1e-17 92.4 89 57.3
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.8e-17 92.0 92 58.7
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 4.8e-17 91.3 98 53.1
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 6.2e-17 90.9 80 63.8
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 8.1e-17 90.5 103 55.3
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 8.1e-17 90.5 98 55.1
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.4e-16 89.7 92 57.6
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 1.4e-16 89.7 100 54.0
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 1.4e-16 89.7 102 52.0
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 1.8e-16 89.4 84 60.7
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 3.1e-16 88.6 102 53.9
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 4.0e-16 88.2 103 55.3
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 4.0e-16 88.2 102 52.0
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 5.3e-16 87.8 101 54.5
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 6.9e-16 87.4 100 53.0
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 9.0e-16 87.0 95 58.9
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 1.5e-15 86.3 100 53.0
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 1.5e-15 86.3 102 52.9
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 2.0e-15 85.9 84 60.7
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 2.6e-15 85.5 109 53.2
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 3.4e-15 85.1 88 58.0
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 3.4e-15 85.1 99 56.6
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 3.4e-15 85.1 102 50.0
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 7.6e-15 84.0 90 52.2
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 9.9e-15 83.6 83 61.4
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 9.9e-15 83.6 116 50.9
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.7e-14 82.8 98 55.1
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 2.2e-14 82.4 93 52.7
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 3.8e-14 81.6 102 52.0
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 3.8e-14 81.6 92 58.7
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 1.9e-13 79.3 100 53.0
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 1.9e-13 79.3 100 53.0
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 3.2e-13 78.6 99 51.5
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 7.1e-13 77.4 87 54.0
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 7.1e-13 77.4 80 53.8
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 9.3e-13 77.0 100 52.0
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.6e-12 76.3 101 52.5
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 1.6e-12 76.3 100 52.0
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 2.1e-12 75.9 100 51.0
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 2.7e-12 75.5 109 50.5
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 7.8e-12 73.9 91 52.7
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 1.3e-11 73.2 102 47.1
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 5.1e-11 71.2 102 52.0
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 8.7e-11 70.5 80 52.5
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 4.3e-10 68.2 102 50.0
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 4.3e-10 68.2 102 50.0
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 4.3e-10 68.2 102 50.0
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 4.3e-10 68.2 102 51.0
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 4.3e-10 68.2 62 62.9
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 2.1e-09 65.9 102 49.0
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 2.1e-09 65.9 102 48.0
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 2.1e-09 65.9 102 48.0
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 2.8e-09 65.5 81 51.9
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.4e-08 63.2 72 50.0
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 3.1e-08 62.0 82 43.9
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 5.3e-08 61.2 87 47.1
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 2.6e-07 58.9 99 42.4
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 9.9e-07 57.0 87 44.8


User provided reference genes

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