Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15464 Trifolium pratense HOM05D001207 ORTHO05D411055 1.0e-45 186.4 95 100.0
Psat1g022840 Pisum sativum HOM05D001207 ORTHO05D009015 2.4e-23 112.1 94 70.2
Medtr2g461290 Medicago truncatula HOM05D001207 ORTHO05D009015 1.3e-21 106.3 91 69.2
Ca_03887_v3 Cicer arietinum L. HOM05D001207 ORTHO05D009015 7.5e-17 90.5 95 68.4
Ca_30990_v3 Cicer arietinum L. HOM05D001207 ORTHO05D007056 7.5e-17 90.5 95 68.4
Lj5g0002827 Lotus japonicus HOM05D001207 ORTHO05D009015 1.8e-15 85.9 105 60.0
arahy.Tifrunner.gnm1.ann1.HFL4GJ Arachis hypogaea HOM05D001207 ORTHO05D009015 9.1e-15 83.6 99 56.6
Glyma.15G203100 Glycine max HOM05D001207 ORTHO05D009015 7.7e-14 80.5 81 60.5
Lalb_Chr23g0275791 Lupinus albus HOM05D001207 ORTHO05D009015 1.0e-13 80.1 97 58.8
Glyma.09G096800 Glycine max HOM05D001207 ORTHO05D009015 5.5e-12 74.3 81 56.8
arahy.Tifrunner.gnm1.ann1.TBA1JX Arachis hypogaea HOM05D001207 ORTHO05D009015 2.8e-11 72.0 99 52.5
VMungo1309G0472 Vigna mungo HOM05D001207 ORTHO05D009015 2.8e-11 72.0 92 53.3
Hma1.2p1_0182F.1_g080600 Hydrangea macrophylla HOM05D001207 ORTHO05D009015 1.2e-09 66.6 91 50.5
CANSAT11G0601 Cannabis sativa HOM05D001207 ORTHO05D009015 5.7e-09 64.3 72 51.4
Gohir.A06G048800 Gossypium hirsutum HOM05D001207 ORTHO05D009015 1.3e-08 63.2 96 45.8
Phvul.009G208900 Phaseolus vulgaris HOM05D001207 ORTHO05D009015 1.7e-08 62.8 104 45.2
CAN.G551.23 Capsicum annuum HOM05D001207 ORTHO05D009015 2.2e-08 62.4 76 51.3
PGR142G3550 Punica granatum HOM05D001207 ORTHO05D009015 2.8e-08 62.0 88 48.9
TAR636G0058 Trochodendron aralioides HOM05D001207 ORTHO05D007056 2.8e-08 62.0 56 55.4
Gohir.D06G048500 Gossypium hirsutum HOM05D001207 ORTHO05D009015 3.7e-08 61.6 100 48.0
MD02G1012500 Malus domestica HOM05D001207 ORTHO05D009015 6.3e-08 60.8 60 60.0
Manes.14G139700 Manihot esculenta HOM05D001207 ORTHO05D009015 6.3e-08 60.8 80 52.5
GSVIVG01001035001 Vitis vinifera HOM05D001207 ORTHO05D009015 1.1e-07 60.1 47 63.8
Nn8g39732 Nelumbo nucifera HOM05D001207 ORTHO05D009015 1.4e-07 59.7 85 45.9
Prupe.7G253500 Prunus persica HOM05D001207 ORTHO05D009015 1.4e-07 59.7 60 60.0
Thecc.09G142600 Theobroma cacao HOM05D001207 ORTHO05D009015 1.4e-07 59.7 38 76.3
AUR62011265 Chenopodium quinoa HOM05D001207 ORTHO05D009015 1.8e-07 59.3 53 60.4
Sabra18G0096400 Salix brachista HOM05D000238 ORTHO05D001889 2.4e-07 58.9 31 87.1
TWI34G1792 Tripterygium wilfordii HOM05D001207 ORTHO05D009015 2.4e-07 58.9 60 56.7
vmacro06110 Vaccinium macrocarpon HOM05D001207 ORTHO05D009015 2.4e-07 58.9 91 46.2
CsaV3_2G003460 Cucumis sativus L. HOM05D001207 ORTHO05D009015 3.1e-07 58.5 40 67.5
Gorai.010G054600 Gossypium raimondii HOM05D001207 ORTHO05D009015 3.1e-07 58.5 100 47.0
Rhsim03G0254100 Rhododendron simsii HOM05D001207 ORTHO05D009015 3.1e-07 58.5 52 51.9
Sopen11g010480 Solanum pennellii HOM05D001207 ORTHO05D007056 3.1e-07 58.5 83 48.2
Cpa.g.sc397.9 Carica papaya HOM05D001207 ORTHO05D007056 4.1e-07 58.2 46 63.0
ClCG11G003640 Citrullus lanatus HOM05D001207 ORTHO05D009015 4.1e-07 58.2 59 54.2
Lsat_1_v5_gn_5_90580 Lactuca sativa HOM05D001207 ORTHO05D009015 5.4e-07 57.8 48 56.2
Potri.018G113400 Populus trichocarpa HOM05D001207 ORTHO05D009015 5.4e-07 57.8 100 46.0
CiPaw.07G234600 Carya illinoinensis HOM05D001207 ORTHO05D007056 7.0e-07 57.4 87 43.7
Atru.chr7.251 Acer truncatum HOM05D001207 ORTHO05D009015 9.2e-07 57.0 97 44.3
Carub.0007s3100 Capsella rubella HOM05D001207 ORTHO05D009015 9.2e-07 57.0 92 44.6
Peaxi162Scf00177g00814 Petunia axillaris HOM05D001207 ORTHO05D009015 9.2e-07 57.0 81 45.7
EL10Ac8g18828 Beta vulgaris HOM05D001207 ORTHO05D009015 1.2e-06 56.6 39 71.8
AUR62041441 Chenopodium quinoa HOM05D001207 ORTHO05D009015 1.2e-06 56.6 36 75.0
AUR62043763 Chenopodium quinoa HOM05D001207 ORTHO05D009015 1.2e-06 56.6 36 75.0
Oeu040777.3 Olea europaea HOM05D001207 ORTHO05D009015 1.6e-06 56.2 29 86.2
AT5G35170 Arabidopsis thaliana HOM05D001207 ORTHO05D009015 2.0e-06 55.8 31 83.9
Nitab4.5_0005330g0050 Nicotiana tabacum HOM05D001207 ORTHO05D009015 2.0e-06 55.8 95 45.3
HPP92_003781 Vanilla planifolia HOM05D001207 ORTHO05D009015 2.0e-06 55.8 88 46.6
Ah.11g040880 Amaranthus hybridus HOM05D001207 ORTHO05D009015 2.7e-06 55.5 96 43.8
AL7G44010 Arabidopsis lyrata HOM05D001207 ORTHO05D009015 2.7e-06 55.5 31 83.9
CiPaw.16G117200 Carya illinoinensis HOM05D001207 ORTHO05D009015 2.7e-06 55.5 39 71.8
MELO3C004452.2 Cucumis melo HOM05D001207 ORTHO05D009015 2.7e-06 55.5 64 48.4
FAN23G1325 Fragaria x ananassa HOM05D001207 ORTHO05D009015 2.7e-06 55.5 84 48.8
FAN26G2247 Fragaria x ananassa HOM05D001207 ORTHO05D009015 2.7e-06 55.5 84 48.8
Cc10_g11290 Coffea canephora HOM05D001207 ORTHO05D007056 3.5e-06 55.1 54 55.6
Dinv43194 Davidia involucrata HOM05D001207 ORTHO05D009015 3.5e-06 55.1 91 45.1
Sc08g0004930 Simmondsia chinensis HOM05D001207 ORTHO05D009015 3.5e-06 55.1 77 45.5
BcaB04g18058 Brassica carinata HOM05D001207 ORTHO05D009015 4.5e-06 54.7 32 75.0
BcaC07g37674 Brassica carinata HOM05D001207 ORTHO05D009015 4.5e-06 54.7 32 75.0
A08p09620 Brassica napus HOM05D001207 ORTHO05D009015 4.5e-06 54.7 32 75.0
BolC8t48045H Brassica oleracea HOM05D001207 ORTHO05D009015 4.5e-06 54.7 32 75.0
BraA08t32959Z Brassica rapa HOM05D001207 ORTHO05D009015 4.5e-06 54.7 32 75.0
Haze_19308 Corylus avellana HOM05D001207 ORTHO05D009015 5.9e-06 54.3 39 71.8
FAN19G3000 Fragaria x ananassa HOM05D001207 ORTHO05D009015 5.9e-06 54.3 84 48.8
Cc06_g07370 Coffea canephora HOM05D001207 ORTHO05D009015 7.8e-06 53.9 56 51.8
Lj9A710G64 Lonicera japonica HOM05D001207 ORTHO05D009015 7.8e-06 53.9 29 82.8


User provided reference genes

Program Settings