Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15442 Trifolium pratense HOM05D024898 ORTHO05D000006 2.1e-67 258.8 126 100.0
TPR.G16991 Trifolium pratense HOM05D001538 ORTHO05D000007 2.3e-45 185.7 129 71.3
Medtr7g406750 Medicago truncatula HOM05D000024 ORTHO05D000006 2.2e-24 115.9 89 61.8
Medtr6g463840 Medicago truncatula HOM05D000022 ORTHO05D000006 2.4e-23 112.5 145 39.3
TPR.G11081 Trifolium pratense HOM05D000024 ORTHO05D000006 1.0e-21 107.1 85 56.5
TPR.G28453 Trifolium pratense HOM05D000003 ORTHO05D029805 1.3e-21 106.7 136 41.9
Medtr4g104480 Medicago truncatula HOM05D000003 ORTHO05D000006 1.7e-21 106.3 84 60.7
TPR.G1000 Trifolium pratense HOM05D001538 ORTHO05D000006 1.7e-21 106.3 83 56.6
Medtr0098s0090 Medicago truncatula HOM05D000003 ORTHO05D000006 8.7e-21 104.0 86 54.7
Medtr5g058210 Medicago truncatula HOM05D000003 ORTHO05D000006 1.3e-19 100.1 86 55.8
TPR.G19697 Trifolium pratense HOM05D001538 ORTHO05D004353 1.6e-19 99.8 85 49.4
Psat2g068680 Pisum sativum HOM05D000024 ORTHO05D000006 2.8e-19 99.0 84 51.2
TPR.G36561 Trifolium pratense HOM05D000003 ORTHO05D000006 1.8e-18 96.3 88 48.9
TPR.G28468 Trifolium pratense HOM05D000003 ORTHO05D000006 2.4e-18 95.9 83 54.2
Psat2g068560 Pisum sativum HOM05D000024 ORTHO05D000006 3.1e-18 95.5 84 50.0
TPR.G33043 Trifolium pratense HOM05D000024 ORTHO05D000006 3.1e-18 95.5 88 47.7
TPR.G35028 Trifolium pratense HOM05D001242 ORTHO05D001089 3.1e-18 95.5 129 38.8
TPR.G13832 Trifolium pratense HOM05D001538 ORTHO05D000007 4.0e-18 95.1 84 46.4
Medtr1g059490 Medicago truncatula HOM05D000003 ORTHO05D000006 5.3e-18 94.7 85 51.8
TPR.G36653 Trifolium pratense HOM05D000003 ORTHO05D000006 5.3e-18 94.7 86 50.0
TPR.G30135 Trifolium pratense HOM05D024898 ORTHO05D000006 9.0e-18 94.0 80 50.0
Medtr8g442690 Medicago truncatula HOM05D000003 ORTHO05D000006 2.6e-17 92.4 105 44.8
Medtr0665s0030 Medicago truncatula HOM05D000003 ORTHO05D000006 3.4e-17 92.0 86 50.0
PSO801G0582 Papaver somniferum HOM05D000003 ORTHO05D000004 4.4e-17 91.7 89 47.2
Lalb_Chr13g0290751 Lupinus albus HOM05D000003 ORTHO05D000004 7.6e-17 90.9 95 45.3
Medtr0111s0070 Medicago truncatula HOM05D000003 ORTHO05D000006 9.9e-17 90.5 85 47.1
TPR.G21875 Trifolium pratense HOM05D000003 ORTHO05D000006 1.3e-16 90.1 88 45.5
Psat4g183720 Pisum sativum HOM05D000003 ORTHO05D000006 1.7e-16 89.7 107 41.1
TPR.G24447 Trifolium pratense HOM05D000003 ORTHO05D000006 1.7e-16 89.7 100 45.0
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 6.4e-16 87.8 89 47.2
PSO674G0028 Papaver somniferum HOM05D000003 ORTHO05D000006 8.4e-16 87.4 97 44.3
Medtr0001s0070 Medicago truncatula HOM05D000024 ORTHO05D000006 7.1e-15 84.3 85 47.1
Psat5g185920 Pisum sativum HOM05D039608 ORTHO05D000006 2.7e-14 82.4 105 42.9
Psat4g216680 Pisum sativum HOM05D001538 ORTHO05D026040 6.0e-14 81.3 84 47.6
TPR.G20502 Trifolium pratense HOM05D000024 ORTHO05D000006 7.9e-14 80.9 60 56.7
Medtr0106s0030 Medicago truncatula HOM05D000024 ORTHO05D000006 1.0e-13 80.5 82 47.6
Lj9C305T8 Lonicera japonica HOM05D001538 ORTHO05D000007 1.7e-13 79.7 92 43.5
Lj5C374G1 Lonicera japonica HOM05D000003 ORTHO05D000006 6.6e-13 77.8 78 44.9
FvH4_4g02432 Fragaria vesca HOM05D014581 ORTHO05D017919 1.9e-12 76.3 89 42.7
Atru.chr5.1378 Acer truncatum HOM05D000003 ORTHO05D000006 5.6e-12 74.7 85 38.8
TPR.G35484 Trifolium pratense HOM05D000003 ORTHO05D049467 7.4e-12 74.3 66 47.0
Psat7g061080 Pisum sativum HOM05D000003 ORTHO05D000006 1.3e-11 73.6 60 53.3
RcHm_v2.0_Chr5g0074731 Rosa chinensis HOM05D000003 ORTHO05D000004 1.6e-11 73.2 89 38.2
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-11 72.8 79 45.6
Glyma.20G224250 Glycine max HOM05D000024 ORTHO05D000006 1.1e-10 70.5 84 42.9
Atru.chr1.2291 Acer truncatum HOM05D000024 ORTHO05D000006 1.4e-10 70.1 89 38.2
vmacro18598 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 2.4e-10 69.3 87 41.4
Lalb_Chr02g0151651 Lupinus albus HOM05D000003 ORTHO05D000006 3.1e-10 68.9 70 50.0
Atru.chr6.1191 Acer truncatum HOM05D000003 ORTHO05D000006 6.9e-10 67.8 89 40.4
Psat3g096120 Pisum sativum HOM05D024898 ORTHO05D026040 6.9e-10 67.8 69 50.7
Atru.chr8.1018 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-10 67.4 89 37.1
FvH4_4g20002 Fragaria vesca HOM05D000351 ORTHO05D000250 1.5e-09 66.6 131 32.8
PSO111G0003 Papaver somniferum HOM05D000003 ORTHO05D000006 2.6e-09 65.9 85 36.5
FvH4_1g13572 Fragaria vesca HOM05D001538 ORTHO05D000007 3.4e-09 65.5 84 35.7
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 3.4e-09 65.5 95 32.6
Psat0s193g0360 Pisum sativum HOM05D001538 ORTHO05D026040 3.4e-09 65.5 55 52.7
Atru.chr3.2348 Acer truncatum HOM05D000003 ORTHO05D000006 4.5e-09 65.1 85 36.5
Carub.0008s0629 Capsella rubella HOM05D000003 ORTHO05D000004 5.8e-09 64.7 90 38.9
Atru.chr2.2596 Acer truncatum HOM05D000003 ORTHO05D000006 7.6e-09 64.3 81 35.8
MBI18_g01966_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.6e-09 64.3 82 37.8
Phvul.002G098400 Phaseolus vulgaris HOM05D024898 ORTHO05D026040 7.6e-09 64.3 59 45.8
Psat3g091600 Pisum sativum HOM05D000003 ORTHO05D000004 9.9e-09 63.9 76 42.1
PSO384G2824 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-08 63.5 86 33.7
PSO063G6225 Papaver somniferum HOM05D000003 ORTHO05D000004 1.7e-08 63.2 85 37.6
FvH4_2g08332 Fragaria vesca HOM05D000024 ORTHO05D000006 2.2e-08 62.8 82 39.0
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 2.9e-08 62.4 86 37.2
Medtr8g045770 Medicago truncatula HOM05D028214 ORTHO05D000006 3.8e-08 62.0 46 54.3
PSO561G0004 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-08 62.0 88 36.4
Aqoxy2G01321 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.9e-08 61.6 86 36.0
Psat1g141600 Pisum sativum HOM05D001538 ORTHO05D000007 6.4e-08 61.2 55 49.1
MBI15_g37534_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 8.4e-08 60.8 85 36.5
PSO675G7221 Papaver somniferum HOM05D000003 ORTHO05D000006 8.4e-08 60.8 86 38.4
PSO675G1464 Papaver somniferum HOM05D000003 ORTHO05D000006 1.1e-07 60.5 78 39.7
PSO135G0136 Papaver somniferum HOM05D000003 ORTHO05D000006 1.4e-07 60.1 81 33.3
Dinv13615 Davidia involucrata HOM05D000003 ORTHO05D000007 1.9e-07 59.7 105 33.3
PSO339G0415 Papaver somniferum HOM05D000003 ORTHO05D000006 1.9e-07 59.7 107 32.7
Sopen00g009820 Solanum pennellii HOM05D000003 ORTHO05D000004 1.9e-07 59.7 85 31.8
Aqoxy4G01060 Aquilegia oxysepala HOM05D002351 ORTHO05D000006 2.4e-07 59.3 84 36.9
PSO063G1813 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-07 59.3 79 40.5
PSO063G5894 Papaver somniferum HOM05D000003 ORTHO05D000006 2.4e-07 59.3 75 40.0
PSO675G0938 Papaver somniferum HOM05D000003 ORTHO05D000006 2.4e-07 59.3 84 36.9
PSO063G0974 Papaver somniferum HOM05D000003 ORTHO05D000004 3.2e-07 58.9 84 35.7
PSO541G4967 Papaver somniferum HOM05D000003 ORTHO05D000006 3.2e-07 58.9 82 36.6
PSO561G0036 Papaver somniferum HOM05D000003 ORTHO05D000006 3.2e-07 58.9 84 38.1
PSO675G8830 Papaver somniferum HOM05D000003 ORTHO05D000006 3.2e-07 58.9 82 37.8
FvH4_6g09220 Fragaria vesca HOM05D001037 ORTHO05D046498 4.2e-07 58.5 57 43.9
MBI15_g26822_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 4.2e-07 58.5 85 35.3
PSO532G0061 Papaver somniferum HOM05D000003 ORTHO05D000006 4.2e-07 58.5 83 33.7
Atru.chr6.162 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-07 58.2 79 36.7
PSO541G4805 Papaver somniferum HOM05D000003 ORTHO05D000004 5.5e-07 58.2 85 31.8
PSO675G7083 Papaver somniferum HOM05D000003 ORTHO05D000006 5.5e-07 58.2 85 34.1
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 5.5e-07 58.2 79 36.7
TPR.G20033 Trifolium pratense HOM05D000024 ORTHO05D000006 5.5e-07 58.2 50 52.0
Aqoxy1G03091 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.1e-07 57.8 90 33.3
MBI07_g02010_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 7.1e-07 57.8 79 36.7
PSO339G2808 Papaver somniferum HOM05D000003 ORTHO05D000006 7.1e-07 57.8 82 35.4
PSO384G3751 Papaver somniferum HOM05D000003 ORTHO05D000651 7.1e-07 57.8 86 36.0
TWI56G0972 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 7.1e-07 57.8 79 35.4
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 57.4 93 31.2
Atru.chr3.3701 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 57.4 81 35.8
Aqoxy2G01976 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 9.3e-07 57.4 84 36.9
Aqoxy2G02483 Aquilegia oxysepala HOM05D000024 ORTHO05D000006 9.3e-07 57.4 84 35.7
PSO302G0095 Papaver somniferum HOM05D000003 ORTHO05D000006 9.3e-07 57.4 79 36.7
PSO761G0702 Papaver somniferum HOM05D000003 ORTHO05D000006 9.3e-07 57.4 87 37.9
FvH4_3g31112 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-06 57.0 79 36.7
PSO151G0232 Papaver somniferum HOM05D000003 ORTHO05D000006 1.6e-06 56.6 80 33.8
PSO832G1054 Papaver somniferum HOM05D000003 ORTHO05D000006 1.6e-06 56.6 77 40.3
QL04p073937 Quercus lobata HOM05D001696 ORTHO05D001746 1.6e-06 56.6 77 36.4
Aqoxy1G03910 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.1e-06 56.2 84 35.7
Aqoxy6G01288 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 2.1e-06 56.2 84 35.7
CSS0039659 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.1e-06 56.2 82 32.9
Dinv31288 Davidia involucrata HOM05D000003 ORTHO05D000006 2.1e-06 56.2 79 31.6
PGSC0003DMG400045189 Solanum tuberosum HOM05D000003 ORTHO05D000006 2.1e-06 56.2 86 34.9
THA.LOC104806035 Tarenaya hassleriana HOM05D000003 ORTHO05D000006 2.1e-06 56.2 90 37.8
CANSAT01G2488 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-06 55.8 84 33.3
MBI11_g41495_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 2.7e-06 55.8 84 33.3
MBI16_g31479_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.7e-06 55.8 108 31.5
PSO832G1688 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 87 35.6
PSO832G2196 Papaver somniferum HOM05D000003 ORTHO05D000651 2.7e-06 55.8 87 35.6
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 2.7e-06 55.8 59 47.5
Atru.chr13.2319 Acer truncatum HOM05D000003 ORTHO05D000006 3.5e-06 55.5 80 33.8
MBI19_g23824_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 3.5e-06 55.5 78 34.6
PSO356G0004 Papaver somniferum HOM05D000003 ORTHO05D000006 3.5e-06 55.5 82 31.7
PSO675G9208 Papaver somniferum HOM05D000003 ORTHO05D000004 3.5e-06 55.5 87 35.6
MBI17_g22831_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.6e-06 55.1 84 32.1
PSO017G3568 Papaver somniferum HOM05D000003 ORTHO05D000006 4.6e-06 55.1 76 36.8
PSO063G2617 Papaver somniferum HOM05D000003 ORTHO05D000004 4.6e-06 55.1 81 32.1
PSO063G5132 Papaver somniferum HOM05D000003 ORTHO05D000006 4.6e-06 55.1 86 33.7
PSO170G6005 Papaver somniferum HOM05D000003 ORTHO05D000004 4.6e-06 55.1 85 36.5
PSO210G1762 Papaver somniferum HOM05D000003 ORTHO05D000006 4.6e-06 55.1 82 35.4
Atru.chr6.601 Acer truncatum HOM05D000003 ORTHO05D000006 6.0e-06 54.7 73 34.2
Aqoxy1G03679 Aquilegia oxysepala HOM05D000024 ORTHO05D000006 6.0e-06 54.7 81 35.8
CANSAT21G1068 Cannabis sativa HOM05D000003 ORTHO05D000006 6.0e-06 54.7 82 34.1
FvH4_4g08213 Fragaria vesca HOM05D001538 ORTHO05D000007 6.0e-06 54.7 69 39.1
PSO170G0648 Papaver somniferum HOM05D000003 ORTHO05D000006 6.0e-06 54.7 90 30.0
PSO393G0001 Papaver somniferum HOM05D000003 ORTHO05D000004 6.0e-06 54.7 83 34.9
PSO675G3907 Papaver somniferum HOM05D000003 ORTHO05D000006 6.0e-06 54.7 82 31.7
PSO832G1270 Papaver somniferum HOM05D000003 ORTHO05D000651 6.0e-06 54.7 87 34.5
Psat1g010040 Pisum sativum HOM05D001538 ORTHO05D000006 6.0e-06 54.7 54 44.4
RcHm_v2.0_Chr3g0455401 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-06 54.7 59 47.5
Hund22672 Selenicereus undatus HOM05D000003 ORTHO05D000006 6.0e-06 54.7 82 32.9
SGA_v2.0_scaffold477G52149 Striga asiatica HOM05D000003 ORTHO05D000004 6.0e-06 54.7 82 39.0
Aqoxy4G01227 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.9e-06 54.3 83 33.7
CANSAT80G0416 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 54.3 82 35.4
Dinv04130 Davidia involucrata HOM05D000024 ORTHO05D000006 7.9e-06 54.3 86 33.7
Dinv15977 Davidia involucrata HOM05D000003 ORTHO05D000006 7.9e-06 54.3 105 33.3
FvH4_5g28591 Fragaria vesca HOM05D000003 ORTHO05D000006 7.9e-06 54.3 80 35.0
PSO206G0016 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-06 54.3 83 36.1
PSO339G5824 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-06 54.3 87 35.6
PSO500G0047 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-06 54.3 85 36.5
Hund19901 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.9e-06 54.3 78 33.3
Sopen00g008350 Solanum pennellii HOM05D000003 ORTHO05D000004 7.9e-06 54.3 85 28.2


User provided reference genes

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