Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15433 Trifolium pratense HOM05D001558 ORTHO05D003061 6.7e-30 133.3 63 100.0
Psat7g142320 Pisum sativum HOM05D001558 ORTHO05D003061 3.7e-28 127.5 63 95.2
Ca_19441_v3 Cicer arietinum L. HOM05D001558 ORTHO05D003061 9.0e-27 122.9 63 90.5
Medtr4g052540 Medicago truncatula HOM05D001558 ORTHO05D003061 9.0e-27 122.9 63 90.5
Lj3g0014791 Lotus japonicus HOM05D001558 ORTHO05D003061 1.4e-24 115.5 63 87.3
Lalb_Chr03g0028201 Lupinus albus HOM05D001558 ORTHO05D003061 1.9e-24 115.2 63 85.7
Glyma.12G186400 Glycine max HOM05D001558 ORTHO05D003061 1.6e-23 112.1 63 84.1
Phvul.005G122300 Phaseolus vulgaris HOM05D001558 ORTHO05D003061 7.9e-23 109.8 63 79.4
VMungo1127G1610 Vigna mungo HOM05D001558 ORTHO05D003061 2.3e-22 108.2 63 82.5
Glyma.11G181700 Glycine max HOM05D001558 ORTHO05D003061 3.9e-22 107.5 63 79.4
Glyma.12G091500 Glycine max HOM05D001558 ORTHO05D003061 3.9e-22 107.5 63 81.0
Phvul.011G095900 Phaseolus vulgaris HOM05D001558 ORTHO05D003061 3.9e-22 107.5 63 81.0
Lalb_Chr24g0393521 Lupinus albus HOM05D001558 ORTHO05D003061 6.7e-22 106.7 63 79.4
Glyma.13G315100 Glycine max HOM05D001558 ORTHO05D003061 3.3e-21 104.4 63 77.8
arahy.Tifrunner.gnm1.ann1.2IR9C4 Arachis hypogaea HOM05D001558 ORTHO05D003061 6.3e-20 100.1 63 76.2
arahy.Tifrunner.gnm1.ann1.Q5DPKW Arachis hypogaea HOM05D001558 ORTHO05D003061 6.3e-20 100.1 63 76.2
MD03G1149300 Malus domestica HOM05D001558 ORTHO05D003061 9.0e-19 96.3 63 76.2
Cpa.g.sc195.17 Carica papaya HOM05D001558 ORTHO05D003061 2.0e-18 95.1 63 69.8
Prupe.6G135200 Prunus persica HOM05D001558 ORTHO05D003061 2.6e-18 94.7 63 74.6
Peaxi162Scf00224g00119 Petunia axillaris HOM05D001558 ORTHO05D003061 3.4e-18 94.4 64 70.3
Sabra09G0125100 Salix brachista HOM05D001558 ORTHO05D003061 3.4e-18 94.4 63 69.8
CANSAT54G1061 Cannabis sativa HOM05D001558 ORTHO05D003061 5.9e-18 93.6 63 68.3
CAN.G745.8 Capsicum annuum HOM05D001558 ORTHO05D003061 1.0e-17 92.8 64 70.3
Gohir.D07G114700 Gossypium hirsutum HOM05D001558 ORTHO05D003061 1.0e-17 92.8 63 69.8
Gorai.001G122900 Gossypium raimondii HOM05D001558 ORTHO05D003061 1.0e-17 92.8 63 69.8
Duzib150G1636 Durio zibethinus HOM05D001558 ORTHO05D003061 1.3e-17 92.4 63 71.4
COL.COLO4_34012 Corchorus olitorius HOM05D001558 ORTHO05D003061 1.7e-17 92.0 63 69.8
FvH4_3g25550 Fragaria vesca HOM05D001558 ORTHO05D003061 1.7e-17 92.0 63 73.0
FAN11G0115 Fragaria x ananassa HOM05D001558 ORTHO05D003061 1.7e-17 92.0 63 73.0
Gohir.A07G110900 Gossypium hirsutum HOM05D001558 ORTHO05D003061 1.7e-17 92.0 63 68.3
RcHm_v2.0_Chr5g0046541 Rosa chinensis HOM05D001558 ORTHO05D003061 1.7e-17 92.0 63 71.4
FAN16G2794 Fragaria x ananassa HOM05D001558 ORTHO05D003061 2.2e-17 91.7 63 71.4
Solyc11g068650.2 Solanum lycopersicum HOM05D001558 ORTHO05D003061 2.2e-17 91.7 64 68.8
Sopen11g027370 Solanum pennellii HOM05D001558 ORTHO05D003061 2.2e-17 91.7 64 68.8
CiPaw.14G098300 Carya illinoinensis HOM05D001558 ORTHO05D003061 3.8e-17 90.9 64 71.9
TAR623G0898 Trochodendron aralioides HOM05D001558 ORTHO05D003061 5.0e-17 90.5 63 66.7
FAN25G0112 Fragaria x ananassa HOM05D001558 ORTHO05D003061 6.5e-17 90.1 63 71.4
Manes.11G163800 Manihot esculenta HOM05D001558 ORTHO05D003061 6.5e-17 90.1 63 69.8
TWI75G0591 Tripterygium wilfordii HOM05D001558 ORTHO05D003061 6.5e-17 90.1 63 66.7
Ah.08g223510 Amaranthus hybridus HOM05D001558 ORTHO05D003061 8.5e-17 89.7 63 68.3
Potri.009G159900 Populus trichocarpa HOM05D001558 ORTHO05D003061 8.5e-17 89.7 63 66.7
Nitab4.5_0000731g0050 Nicotiana tabacum HOM05D001558 ORTHO05D003061 1.1e-16 89.4 64 67.2
Nitab4.5_0008177g0010 Nicotiana tabacum HOM05D001558 ORTHO05D003061 1.1e-16 89.4 64 67.2
Duzib170G1075 Durio zibethinus HOM05D001558 ORTHO05D003061 1.4e-16 89.0 63 66.7
MD11G1168100 Malus domestica HOM05D001558 ORTHO05D003061 1.4e-16 89.0 63 71.4
Thecc.09G279400 Theobroma cacao HOM05D001558 ORTHO05D003061 1.4e-16 89.0 63 71.4
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 1.4e-16 89.0 61 72.1
MSTRG.12376 Avicennia marina HOM05D001558 ORTHO05D003061 1.9e-16 88.6 64 68.8
Potri.004G197000 Populus trichocarpa HOM05D001558 ORTHO05D003061 1.9e-16 88.6 63 65.1
CSS0001627 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 2.5e-16 88.2 63 68.3
GSVIVG01036086001 Vitis vinifera HOM05D001558 ORTHO05D003061 2.5e-16 88.2 63 65.1
Migut.N02477 Erythranthe guttata HOM05D001558 ORTHO05D003061 3.2e-16 87.8 64 65.6
Oeu031469.1 Olea europaea HOM05D001558 ORTHO05D003061 3.2e-16 87.8 64 65.6
THA.LOC104810924 Tarenaya hassleriana HOM05D001558 ORTHO05D003061 3.2e-16 87.8 63 68.3
EL10Ac7g16332 Beta vulgaris HOM05D001558 ORTHO05D003061 4.2e-16 87.4 63 66.7
PGR102G2335 Punica granatum HOM05D001558 ORTHO05D003061 4.2e-16 87.4 63 65.1
Ciclev10028505m.g Citrus clementina HOM05D001558 ORTHO05D003061 5.5e-16 87.0 63 65.1
Lsat_1_v5_gn_2_59301 Lactuca sativa HOM05D001558 ORTHO05D003061 5.5e-16 87.0 63 66.7
vmacro03326 Vaccinium macrocarpon HOM05D001558 ORTHO05D003061 5.5e-16 87.0 63 66.7
AUR62006468 Chenopodium quinoa HOM05D001558 ORTHO05D003061 7.2e-16 86.7 63 63.5
DCAR_010334 Daucus carota HOM05D001558 ORTHO05D003061 7.2e-16 86.7 63 63.5
FAN21G2859 Fragaria x ananassa HOM05D001558 ORTHO05D003061 9.3e-16 86.3 63 68.3
Lj1A257T27 Lonicera japonica HOM05D001558 ORTHO05D003061 9.3e-16 86.3 63 65.1
Rhsim13G0113300 Rhododendron simsii HOM05D001558 ORTHO05D003061 9.3e-16 86.3 64 68.8
AT5G22350 Arabidopsis thaliana HOM05D001558 ORTHO05D003061 1.2e-15 85.9 64 70.3
AUR62029824 Chenopodium quinoa HOM05D001558 ORTHO05D003061 1.2e-15 85.9 63 63.5
ECA238G0305 Erigeron canadensis HOM05D001558 ORTHO05D003061 1.2e-15 85.9 63 65.1
Oeu035572.1 Olea europaea HOM05D001558 ORTHO05D003061 1.2e-15 85.9 57 71.9
CSS0031917 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 1.6e-15 85.5 63 65.1
CSS0037903 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 1.6e-15 85.5 63 65.1
Eucgr.B03829 Eucalyptus grandis HOM05D001558 ORTHO05D003061 1.6e-15 85.5 63 66.7
HanXRQChr14g0438011 Helianthus annuus HOM05D001558 ORTHO05D003061 2.1e-15 85.1 63 65.1
HPP92_023061 Vanilla planifolia HOM05D001558 ORTHO05D003061 2.7e-15 84.7 63 66.7
Hund18771 Selenicereus undatus HOM05D001558 ORTHO05D003061 4.6e-15 84.0 63 61.9
Sc21g0006990 Simmondsia chinensis HOM05D001558 ORTHO05D003061 4.6e-15 84.0 63 61.9
Hma1.2p1_0587F.1_g184000 Hydrangea macrophylla HOM05D001558 ORTHO05D003061 7.9e-15 83.2 63 61.9
SGA_v2.0_scaffold10G05236 Striga asiatica HOM05D001558 ORTHO05D003061 7.9e-15 83.2 64 62.5
Cfa009991 Carpinus fangiana HOM05D001558 ORTHO05D003061 1.0e-14 82.8 64 65.6
Haze_23352 Corylus avellana HOM05D001558 ORTHO05D003061 1.0e-14 82.8 64 65.6
QL01p011896 Quercus lobata HOM05D001558 ORTHO05D003061 1.3e-14 82.4 65 58.5
Carub.0006s2009 Capsella rubella HOM05D001558 ORTHO05D003061 1.8e-14 82.0 64 67.2
Aqoxy2G01060 Aquilegia oxysepala HOM05D001558 ORTHO05D003061 2.3e-14 81.6 63 61.9
Actinidia24226 Actinidia chinensis HOM05D001558 ORTHO05D003061 3.0e-14 81.3 63 65.1
Actinidia25114 Actinidia chinensis HOM05D001558 ORTHO05D003061 3.0e-14 81.3 63 65.1
PSO339G4265 Papaver somniferum HOM05D001558 ORTHO05D003061 3.0e-14 81.3 63 60.3
PSO801G0143 Papaver somniferum HOM05D001558 ORTHO05D003061 3.0e-14 81.3 63 60.3
Aa31LG1G13180 Aethionema arabicum HOM05D001558 ORTHO05D003061 3.9e-14 80.9 64 65.6
Cpa.g.sc104.92 Carica papaya HOM05D001558 ORTHO05D003061 3.9e-14 80.9 63 63.5
Actinidia07255 Actinidia chinensis HOM05D001558 ORTHO05D003061 5.1e-14 80.5 63 61.9
ATR0820G255 Amborella trichopoda HOM05D001558 ORTHO05D003061 5.1e-14 80.5 63 65.1
AL6G33370 Arabidopsis lyrata HOM05D001558 ORTHO05D003061 5.1e-14 80.5 64 65.6
CARHR191190 Cardamine hirsuta HOM05D001558 ORTHO05D003061 5.1e-14 80.5 64 65.6
MELO3C009494.2 Cucumis melo HOM05D001558 ORTHO05D003061 5.1e-14 80.5 63 58.7
SEGI_37149 Sequoiadendron giganteum HOM05D001558 ORTHO05D003061 6.7e-14 80.1 63 63.5
ClCG10G018720 Citrullus lanatus HOM05D001558 ORTHO05D003061 8.7e-14 79.7 63 57.1
Thhalv10013630m.g Eutrema salsugineum HOM05D001558 ORTHO05D003061 1.1e-13 79.3 64 64.1
BcaB05g22732 Brassica carinata HOM05D001558 ORTHO05D003061 1.5e-13 79.0 64 64.1
BcaC03g13876 Brassica carinata HOM05D001558 ORTHO05D003061 1.5e-13 79.0 64 64.1
BNapus_Darmor_BZH_scaffold_38p00720 Brassica napus HOM05D001558 ORTHO05D003061 1.5e-13 79.0 64 64.1
BolC2t07151H Brassica oleracea HOM05D001558 ORTHO05D003061 1.5e-13 79.0 64 64.1
BraA02t05653Z Brassica rapa HOM05D001558 ORTHO05D003061 1.5e-13 79.0 64 64.1
Sed0004798 Sechium edule HOM05D001558 ORTHO05D003061 1.5e-13 79.0 63 63.5
Sp6g22890 Schrenkiella parvula HOM05D001558 ORTHO05D003061 1.9e-13 78.6 64 64.1
Cfa016647 Carpinus fangiana HOM05D001558 ORTHO05D003061 2.5e-13 78.2 63 61.9
BcaB08g36438 Brassica carinata HOM05D001558 ORTHO05D003061 3.3e-13 77.8 64 64.1
Nn6g34810 Nelumbo nucifera HOM05D001558 ORTHO05D003061 3.3e-13 77.8 63 57.1
ClCG01G011870 Citrullus lanatus HOM05D001558 ORTHO05D003061 5.7e-13 77.0 63 61.9
BcaC04g19567 Brassica carinata HOM05D001558 ORTHO05D003061 7.4e-13 76.6 64 62.5
A10p18480 Brassica napus HOM05D001558 ORTHO05D003061 7.4e-13 76.6 64 62.5
C09p54230 Brassica napus HOM05D001558 ORTHO05D003061 7.4e-13 76.6 64 62.5
C09p54300 Brassica napus HOM05D001558 ORTHO05D003061 7.4e-13 76.6 64 62.5
BolC9t58298H Brassica oleracea HOM05D001558 ORTHO05D003061 7.4e-13 76.6 64 62.5
SMO196G0287 Selaginella moellendorffii HOM05D001558 ORTHO05D003061 7.4e-13 76.6 63 55.6
CiPaw.09G017300 Carya illinoinensis HOM05D001558 ORTHO05D003061 9.7e-13 76.3 63 60.3
CsaV3_3G037510 Cucumis sativus L. HOM05D001558 ORTHO05D003061 1.3e-12 75.9 63 55.6
CsaV3_1G015020 Cucumis sativus L. HOM05D001558 ORTHO05D003061 2.2e-12 75.1 63 60.3
CsaV3_1G015930 Cucumis sativus L. HOM05D001558 ORTHO05D003061 2.2e-12 75.1 63 60.3
Cc01_g08870 Coffea canephora HOM05D001558 ORTHO05D003061 4.8e-12 73.9 68 60.3
QL07p038133 Quercus lobata HOM05D001558 ORTHO05D003061 4.8e-12 73.9 64 57.8
BraA10t43928Z Brassica rapa HOM05D001558 ORTHO05D003061 6.3e-12 73.6 64 60.9
CDE06G2666 Ceratophyllum demersum HOM05D001558 ORTHO05D003061 1.1e-11 72.8 63 57.1
Duzib093G2141 Durio zibethinus HOM05D001558 ORTHO05D003061 1.1e-11 72.8 63 54.0
Pp3c23_3410 Physcomitrium patens HOM05D001558 ORTHO05D003061 1.1e-11 72.8 63 57.1
Atru.chr8.1443 Acer truncatum HOM05D001558 ORTHO05D003061 1.4e-11 72.4 63 58.7
Haze_19653 Corylus avellana HOM05D001558 ORTHO05D003061 2.4e-11 71.6 63 57.1
MELO3C004681.2 Cucumis melo HOM05D001558 ORTHO05D003061 2.4e-11 71.6 63 58.7
Gohir.D04G084400 Gossypium hirsutum HOM05D001558 ORTHO05D003061 4.1e-11 70.9 63 54.0
Gorai.009G399700 Gossypium raimondii HOM05D001558 ORTHO05D003061 4.1e-11 70.9 63 54.0
PGR142G3251 Punica granatum HOM05D001558 ORTHO05D003061 4.1e-11 70.9 63 57.1
AagrBONN_evm.TU.Sc2ySwM_369.385 Anthoceros agrestis HOM05D001558 ORTHO05D003061 5.3e-11 70.5 63 55.6
COL.COLO4_29670 Corchorus olitorius HOM05D001558 ORTHO05D003061 6.9e-11 70.1 63 52.4
Ciclev10013428m.g Citrus clementina HOM05D001558 ORTHO05D003061 9.1e-11 69.7 63 52.4
Sed0000974 Sechium edule HOM05D001558 ORTHO05D003061 1.2e-10 69.3 63 50.8
Gohir.A04G059300 Gossypium hirsutum HOM05D001558 ORTHO05D003061 1.5e-10 68.9 63 52.4
Mapoly0038s0050 Marchantia polymorpha HOM05D001558 ORTHO05D003061 2.0e-10 68.6 63 52.4
CANSAT64G2255 Cannabis sativa HOM05D001558 ORTHO05D003061 2.6e-10 68.2 63 52.4
Os02g0535700 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D003061 3.4e-10 67.8 65 56.9
DCAR_012211 Daucus carota HOM05D001558 ORTHO05D003061 7.7e-10 66.6 63 50.8
Pp3c20_13230 Physcomitrium patens HOM05D001558 ORTHO05D003061 7.7e-10 66.6 63 52.4
Zm00001eb181500 Zea mays HOM05D001558 ORTHO05D003061 1.0e-09 66.2 66 54.5
Sabra16G0078000 Salix brachista HOM05D001558 ORTHO05D003061 2.2e-09 65.1 49 57.1
CBR_g33922 Chara braunii HOM05D001558 ORTHO05D003061 8.5e-09 63.2 46 58.7
arahy.Tifrunner.gnm1.ann1.8Z285S Arachis hypogaea HOM05D001558 ORTHO05D003061 1.4e-08 62.4 63 55.6
arahy.Tifrunner.gnm1.ann1.ESQ7GJ Arachis hypogaea HOM05D001558 ORTHO05D003061 3.2e-08 61.2 63 55.6
CSS0015105 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 3.2e-08 61.2 63 55.6
GSVIVG01033893001 Vitis vinifera HOM05D001558 ORTHO05D003061 3.2e-08 61.2 47 59.6
Sabra16G0080900 Salix brachista HOM05D001558 ORTHO05D003061 4.2e-08 60.8 43 60.5
Thecc.05G095600 Theobroma cacao HOM05D001558 ORTHO05D003061 7.2e-08 60.1 63 47.6
A10p30260 Brassica napus HOM05D001558 ORTHO05D003061 9.4e-08 59.7 63 49.2
Atru.chr3.3176 Acer truncatum HOM05D001558 ORTHO05D003061 1.2e-07 59.3 35 77.1
Potri.016G075500 Populus trichocarpa HOM05D001558 ORTHO05D003061 1.2e-07 59.3 43 60.5
FAN02G4308 Fragaria x ananassa HOM05D001558 ORTHO05D003061 4.6e-07 57.4 44 59.1
Manes.09G052051 Manihot esculenta HOM05D001558 ORTHO05D003061 4.6e-07 57.4 63 50.8
FAN14G1517 Fragaria x ananassa HOM05D001558 ORTHO05D003061 6.1e-07 57.0 44 56.8
Lalb_Chr20g0111581 Lupinus albus HOM05D001558 ORTHO05D003061 1.0e-06 56.2 63 47.6
RcHm_v2.0_Chr3g0474821 Rosa chinensis HOM05D001558 ORTHO05D003061 1.0e-06 56.2 44 54.5
THA.LOC104816602 Tarenaya hassleriana HOM05D001558 ORTHO05D003061 1.8e-06 55.5 63 50.8
SGA_v2.0_scaffold35G14039 Striga asiatica HOM05D001558 ORTHO05D003061 2.3e-06 55.1 34 70.6
FAN05G2759 Fragaria x ananassa HOM05D001558 ORTHO05D003061 3.0e-06 54.7 44 54.5
Actinidia31259 Actinidia chinensis HOM05D001558 ORTHO05D003061 3.9e-06 54.3 63 52.4
BcaC06g32588 Brassica carinata HOM05D001558 ORTHO05D003061 6.7e-06 53.5 63 47.6
FAN09G1626 Fragaria x ananassa HOM05D001558 ORTHO05D003061 8.8e-06 53.1 41 58.5
MD14G1031500 Malus domestica HOM05D001558 ORTHO05D003061 8.8e-06 53.1 46 58.7


User provided reference genes

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