Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 0.0e+00 1425.6 732 100.0
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 0.0e+00 1241.5 721 87.1
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 0.0e+00 1227.2 718 86.1
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1209.1 716 84.8
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1204.1 716 84.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 0.0e+00 1204.1 714 84.9
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 0.0e+00 1199.1 717 84.2
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1198.7 716 84.4
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 0.0e+00 1196.8 715 83.9
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 0.0e+00 1188.7 709 83.5
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 0.0e+00 1094.7 715 75.4
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 0.0e+00 1087.8 719 75.0
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 0.0e+00 1086.2 720 74.7
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1084.7 716 75.6
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 2.0e-311 1072.0 716 75.3
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 3.5e-311 1071.2 712 76.7
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 4.5e-311 1070.8 716 74.0
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 1.1e-309 1066.2 717 74.9
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 4.2e-309 1064.3 718 73.7
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 9.3e-309 1063.1 716 73.9
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 1.2e-308 1062.8 703 73.7
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 5.1e-307 1057.4 689 75.5
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 8.2e-305 1050.0 716 73.6
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 6.9e-304 1047.0 716 72.9
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 5.9e-303 1043.9 716 75.3
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 5.0e-302 1040.8 716 73.3
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 6.1e-300 1033.9 716 71.8
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 8.8e-299 1030.0 716 72.8
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 3.3e-298 1028.1 716 71.1
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 5.7e-298 1027.3 828 64.6
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.7e-297 1025.8 716 70.8
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.7e-297 1024.6 716 70.8
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.1e-296 1021.5 716 70.4
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 2.0e-295 1018.8 716 70.5
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 1.0e-294 1016.5 785 67.6
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 2.9e-294 1015.0 716 70.8
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 7.2e-293 1010.4 716 70.8
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 2.6e-290 1001.9 726 69.6
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 5.9e-287 990.7 722 68.4
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.3e-286 989.6 714 69.9
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 2.9e-286 988.4 714 69.5
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 5.0e-286 987.6 716 69.1
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.1e-284 982.2 716 68.9
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 5.2e-283 977.6 716 68.2
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 6.7e-283 977.2 712 67.1
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 2.6e-282 975.3 703 67.9
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 2.2e-281 972.2 712 67.4
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 3.2e-277 958.4 716 66.6
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 3.2e-277 958.4 709 67.1
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 1.6e-276 956.1 716 65.2
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 3.3e-274 948.3 719 66.3
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 9.7e-274 946.8 720 67.8
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 6.3e-273 944.1 721 66.6
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 4.1e-272 941.4 611 75.8
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 7.0e-272 940.6 723 66.7
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 9.1e-272 940.3 687 67.7
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.7e-271 938.7 716 67.0
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.3e-270 936.4 706 66.0
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 4.2e-269 931.4 716 66.2
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 8.0e-268 927.2 713 66.2
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 4.0e-267 924.9 718 65.7
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 4.4e-266 921.4 717 63.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 3.7e-265 918.3 717 65.7
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 7.0e-264 914.1 724 64.4
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 3.3e-261 905.2 652 69.8
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 2.3e-259 899.0 717 62.9
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 8.3e-257 890.6 716 60.9
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 9.2e-256 887.1 717 62.1
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 7.8e-255 884.0 718 61.3
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 7.8e-255 884.0 719 61.8
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 7.8e-255 884.0 718 61.3
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 7.8e-255 884.0 718 61.3
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 1.7e-254 882.9 717 61.6
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 2.3e-254 882.5 719 61.6
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.5e-253 879.8 720 61.7
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 4.3e-253 878.2 717 61.4
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 9.5e-253 877.1 718 61.4
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 8.3e-249 864.0 653 68.9
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 5.2e-235 818.1 719 59.7
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.9e-232 809.7 719 58.7
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 3.2e-232 808.9 719 58.7
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.6e-212 743.4 592 64.2
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.1e-200 704.1 469 71.2
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 3.9e-198 695.7 730 51.2
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.0e-185 654.4 670 54.6
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 3.0e-182 642.9 669 52.6
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 5.7e-181 638.6 472 68.9
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.3e-177 627.5 590 56.1
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 6.5e-177 625.2 665 51.4
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 4.4e-173 612.5 440 72.7
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.5e-170 604.0 660 49.4
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.4e-166 590.9 660 48.5
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 2.4e-147 526.9 420 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.5e-144 517.7 657 44.7
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 3.0e-142 510.0 496 55.0
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 4.4e-141 506.1 366 68.6
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.3e-140 504.6 418 62.4
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.2e-133 481.5 391 59.3
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.2e-127 459.1 482 51.9
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 5.6e-120 436.0 654 38.8
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 3.4e-117 426.8 384 58.9
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 9.6e-112 408.7 290 67.2
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 2.1e-111 407.5 339 61.9
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.0e-109 401.0 328 66.5
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 1.3e-105 388.3 314 65.3
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 1.3e-100 371.7 298 63.4
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 4.3e-96 356.7 267 67.0
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.3e-95 355.1 228 78.1
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.3e-95 355.1 602 37.9
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 4.8e-87 326.6 235 66.8
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 7.6e-77 292.7 219 64.4
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.9e-52 211.1 153 69.9
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 1.5e-51 208.8 163 65.6
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 3.6e-50 204.1 147 64.6
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 5.7e-48 196.8 137 69.3
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.3e-31 142.5 695 26.0
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 2.9e-23 114.8 102 56.9
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 6.4e-15 87.0 61 70.5
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 1.7e-12 79.0 59 64.4
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 5.0e-12 77.4 52 67.3
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 2.5e-11 75.1 45 82.2
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 5.6e-11 73.9 69 59.4
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 4.9e-07 60.8 681 21.1


User provided reference genes

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