Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 3.4e-302 1041.2 664 100.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.0e-197 694.1 598 76.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.9e-175 620.2 607 70.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.5e-153 545.8 643 67.7
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 7.3e-135 485.3 748 54.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 3.0e-120 436.8 747 51.0
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 5.1e-120 436.0 754 50.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.3e-111 406.8 727 47.2
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.9e-108 395.2 750 48.4
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.2e-105 388.3 744 47.8
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.2e-105 388.3 735 45.6
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.1e-105 387.5 718 45.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-103 381.7 710 46.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.9e-103 380.9 761 44.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.9e-99 367.1 683 47.1
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 8.4e-99 365.5 683 47.6
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 7.1e-98 362.5 738 45.3
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.4e-93 347.4 737 49.5
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 5.8e-92 342.8 766 44.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 5.7e-87 326.2 690 43.0
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.6e-81 308.1 734 44.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 6.1e-81 306.2 690 41.0
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 6.1e-81 306.2 674 44.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.3e-80 305.1 764 43.3
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.7e-80 302.8 738 41.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-79 301.2 753 39.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.3e-79 300.1 695 44.6
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-79 299.3 717 41.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-79 299.3 717 41.7
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-78 298.1 736 41.6
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.2e-76 292.0 672 44.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.4e-76 290.4 682 43.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.3e-75 288.5 550 47.6
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.9e-75 287.3 753 42.6
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 8.5e-75 285.8 704 41.3
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.5e-74 284.3 692 38.3
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 4.2e-74 283.5 682 43.4
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.1e-73 281.2 732 39.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.6e-73 280.4 587 44.0
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.0e-72 278.9 742 38.7
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 6.7e-72 276.2 750 38.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-71 275.4 598 43.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-71 275.4 544 46.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 9.7e-71 272.3 581 40.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.1e-69 268.9 718 38.0
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.9e-69 266.2 589 44.5
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.4e-66 258.5 747 40.4
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 7.9e-65 252.7 762 37.7
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 5.2e-64 250.0 746 39.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.5e-63 248.4 753 38.0
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.6e-63 247.7 665 38.8
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 5.7e-63 246.5 699 41.8
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 7.4e-63 246.1 552 47.5
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.8e-62 244.2 670 39.7
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 3.7e-62 243.8 732 40.7
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 5.3e-61 240.0 713 40.8
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.0e-60 238.0 689 38.9
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.6e-60 237.7 724 37.7
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-60 237.7 722 37.3
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.5e-60 237.3 675 38.8
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.5e-60 237.3 721 37.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.0e-59 235.7 653 41.5
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 3.8e-59 233.8 754 38.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 5.0e-59 233.4 692 38.4
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 5.0e-59 233.4 434 54.4
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.1e-58 232.3 563 40.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 4.2e-58 230.3 514 39.9
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 4.2e-58 230.3 598 41.6
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.1e-57 228.0 777 41.3
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.7e-57 227.6 651 42.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.7e-57 227.6 702 35.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 8.0e-57 226.1 588 43.4
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.4e-56 225.3 688 40.0
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.3e-56 224.6 682 40.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 6.7e-56 223.0 606 38.9
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.0e-55 221.5 699 41.5
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.8e-54 217.6 691 39.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 7.0e-53 213.0 564 37.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 9.1e-53 212.6 684 41.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-52 212.2 619 39.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.6e-52 211.8 664 41.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.2e-51 208.0 709 34.7
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.5e-51 206.5 475 42.7
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 8.5e-51 206.1 725 34.9
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 8.5e-51 206.1 686 32.8
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.2e-50 203.8 707 37.6
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 7.2e-50 203.0 623 43.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 7.2e-50 203.0 709 38.6
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 9.4e-50 202.6 645 40.0
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.0e-48 199.1 544 38.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.8e-48 198.4 704 35.8
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.2e-47 195.7 394 41.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.2e-47 195.7 584 37.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.5e-47 195.3 506 38.3
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.4e-47 194.1 692 35.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.4e-47 194.1 641 40.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 4.4e-47 193.7 675 39.6
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.2e-46 191.4 669 38.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.7e-46 190.7 690 34.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.8e-46 190.3 688 36.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 4.8e-46 190.3 671 32.9
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.8e-46 190.3 639 34.7
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 6.3e-46 189.9 680 33.4
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.8e-45 188.3 710 39.0
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.1e-45 187.6 668 38.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.2e-44 185.7 605 37.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.0e-43 182.6 586 35.2
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.2e-42 177.6 320 43.1
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.2e-42 177.2 785 35.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 7.2e-42 176.4 667 31.0
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 4.7e-41 173.7 525 34.3
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.0e-40 172.6 550 40.9
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.0e-39 168.3 319 41.4
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.0e-39 168.3 612 37.7
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.6e-39 167.9 538 36.2
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.4e-39 167.5 628 40.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 9.8e-39 166.0 437 40.5
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.8e-38 164.5 529 36.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 8.3e-38 162.9 682 31.5
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.8e-37 161.8 470 45.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.6e-36 158.7 675 34.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.7e-36 157.9 607 33.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.0e-35 156.0 740 31.6
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 5.0e-35 153.7 520 33.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.6e-34 150.2 542 34.3
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.5e-34 149.4 641 29.8
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 9.5e-34 149.4 516 35.1
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.6e-33 148.7 304 45.1
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-33 147.9 637 29.0
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.0e-32 146.0 535 32.5
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.2e-31 142.5 594 31.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.6e-31 141.4 508 35.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.7e-30 138.7 543 32.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.7e-30 137.5 646 29.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-28 131.3 683 30.7
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.5e-28 131.0 300 38.0
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.6e-28 130.6 373 46.1
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 5.9e-28 130.2 386 35.5
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.9e-28 130.2 243 44.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.8e-28 129.8 540 34.1
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.5e-26 125.6 543 32.2
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 5.6e-26 123.6 513 31.4
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 9.5e-26 122.9 469 33.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.1e-25 121.7 467 39.2
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 4.4e-23 114.0 475 34.3
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 4.4e-23 114.0 475 34.3
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 5.8e-23 113.6 100 65.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-22 112.5 460 33.9
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 8.3e-22 109.8 454 37.0
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.2e-21 106.3 466 33.3
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.3e-19 102.4 469 35.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.7e-19 102.1 514 36.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 8.9e-16 89.7 141 47.5
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-15 88.2 261 34.5
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 4.1e-13 80.9 317 30.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 5.4e-13 80.5 137 43.1
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 9.2e-13 79.7 198 36.4
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.7e-12 78.2 275 29.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.7e-12 78.2 180 40.6
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 5.1e-11 73.9 532 30.3
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.6e-11 73.6 163 37.4
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 5.6e-10 70.5 118 44.1
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.1e-09 68.6 547 28.9
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.8e-09 68.2 281 32.7
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.7e-09 67.4 143 39.9
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 1.4e-08 65.9 483 27.5
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 4.4e-07 60.8 87 52.9
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 9.9e-07 59.7 88 45.5
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 2.9e-06 58.2 76 57.9
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 8.4e-06 56.6 87 49.4
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 8.4e-06 56.6 84 44.0


User provided reference genes

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