Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15318 Trifolium pratense HOM05D008563 ORTHO05D009802 2.4e-65 252.3 154 100.0
Medtr2g058870 Medicago truncatula HOM05D008563 ORTHO05D009956 4.7e-37 158.3 159 57.9
Ca_02709_v3 Cicer arietinum L. HOM05D008563 ORTHO05D009956 4.6e-32 141.7 159 54.7
Psat5g232520 Pisum sativum HOM05D008563 ORTHO05D009802 6.8e-28 127.9 153 56.9
Phvul.009G190900 Phaseolus vulgaris HOM05D008563 ORTHO05D009802 6.0e-16 88.2 157 42.0
Duzib084G1352 Durio zibethinus HOM05D008563 ORTHO05D009802 7.9e-16 87.8 103 54.4
Lj1g0007009 Lotus japonicus HOM05D008563 ORTHO05D009802 5.6e-14 81.6 155 40.6
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 5.6e-14 81.6 106 49.1
VMungo1309G1047 Vigna mungo HOM05D008563 ORTHO05D009802 6.2e-13 78.2 78 56.4
Psat4g045520 Pisum sativum HOM05D008563 ORTHO05D009802 1.1e-12 77.4 100 52.0
CAN.G184.15 Capsicum annuum HOM05D011353 ORTHO05D009802 1.2e-11 73.9 89 51.7
DCAR_011590 Daucus carota HOM05D065511 ORTHO05D009802 4.5e-11 72.0 63 60.3
COL.COLO4_28804 Corchorus olitorius HOM05D008563 ORTHO05D009802 5.8e-11 71.6 74 54.1
Glyma.04G157900 Glycine max HOM05D008563 ORTHO05D009956 1.3e-10 70.5 77 55.8
Sopen05g006040 Solanum pennellii HOM05D011353 ORTHO05D009802 2.2e-10 69.7 87 50.6
PGSC0003DMG400025096 Solanum tuberosum HOM05D011353 ORTHO05D009802 2.2e-10 69.7 89 50.6
Gohir.D12G187700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 2.9e-10 69.3 70 57.1
Solyc05g010270.1 Solanum lycopersicum HOM05D011353 ORTHO05D009802 3.8e-10 68.9 87 50.6
Gorai.008G201100 Gossypium raimondii HOM05D008563 ORTHO05D009802 4.9e-10 68.6 70 55.7
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 6.4e-10 68.2 74 51.4
CiPaw.15G117600 Carya illinoinensis HOM05D008563 ORTHO05D009802 8.4e-10 67.8 116 43.1
Medtr4g112870 Medicago truncatula HOM05D008563 ORTHO05D009802 8.4e-10 67.8 145 38.6
Sed0005169 Sechium edule HOM05D008563 ORTHO05D009802 1.4e-09 67.0 96 44.8
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 2.4e-09 66.2 107 46.7
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 2.4e-09 66.2 107 46.7
Oeu054579.1 Olea europaea HOM05D011353 ORTHO05D009956 2.4e-09 66.2 67 53.7
Lj2g0023718 Lotus japonicus HOM05D018202 ORTHO05D020778 3.2e-09 65.9 120 40.8
Peaxi162Scf00188g00068 Petunia axillaris HOM05D011353 ORTHO05D009802 4.2e-09 65.5 95 47.4
TPR.G2004 Trifolium pratense HOM05D008563 ORTHO05D009802 4.2e-09 65.5 149 40.3
Glyma.06G207600 Glycine max HOM05D008563 ORTHO05D009802 5.5e-09 65.1 80 50.0
Potri.008G113800 Populus trichocarpa HOM05D018804 ORTHO05D013371 5.5e-09 65.1 67 55.2
Gorai.003G104300 Gossypium raimondii HOM05D008563 ORTHO05D009802 7.1e-09 64.7 87 48.3
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 7.1e-09 64.7 66 53.0
Cc11_g11230 Coffea canephora HOM05D011353 ORTHO05D009956 9.3e-09 64.3 71 52.1
Gohir.D03G099300 Gossypium hirsutum HOM05D008563 ORTHO05D009802 9.3e-09 64.3 86 48.8
CSS0016849 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 1.6e-08 63.5 105 43.8
PGSC0003DMG400004059 Solanum tuberosum HOM05D014920 ORTHO05D009802 1.6e-08 63.5 69 53.6
Atru.chr11.1516 Acer truncatum HOM05D018013 ORTHO05D013371 3.5e-08 62.4 83 43.4
VMungo1215G2057 Vigna mungo HOM05D024738 ORTHO05D009802 4.6e-08 62.0 67 53.7
Phvul.003G181300 Phaseolus vulgaris HOM05D024738 ORTHO05D009802 7.9e-08 61.2 158 36.1
Lj4g0009196 Lotus japonicus HOM05D008563 ORTHO05D009802 1.0e-07 60.8 85 50.6
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 1.0e-07 60.8 92 41.3
Solyc06g069340.1 Solanum lycopersicum HOM05D014920 ORTHO05D009802 1.0e-07 60.8 67 53.7
Sopen06g026600 Solanum pennellii HOM05D014920 ORTHO05D009802 1.8e-07 60.1 67 53.7
Actinidia35060 Actinidia chinensis HOM05D014692 ORTHO05D014734 2.3e-07 59.7 71 53.5
Lsat_1_v5_gn_0_39381 Lactuca sativa HOM05D001719 ORTHO05D008373 2.3e-07 59.7 73 49.3
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 2.3e-07 59.7 98 39.8
CSS0048960 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 3.0e-07 59.3 105 41.9
PGSC0003DMG400024516 Solanum tuberosum HOM05D014920 ORTHO05D009802 3.9e-07 58.9 81 46.9
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 3.9e-07 58.9 84 45.2
Lsat_1_v5_gn_4_113140 Lactuca sativa HOM05D038017 ORTHO05D009802 5.1e-07 58.5 84 45.2
Lalb_Chr10g0092501 Lupinus albus HOM05D008889 ORTHO05D009956 5.1e-07 58.5 72 54.2
Phvul.008G023501 Phaseolus vulgaris HOM05D008889 ORTHO05D009956 5.1e-07 58.5 98 41.8
A07p12790 Brassica napus HOM05D008861 ORTHO05D011066 6.7e-07 58.2 105 40.0
BraA07t29056Z Brassica rapa HOM05D008861 ORTHO05D011066 6.7e-07 58.2 105 40.0
Cpa.g.sc3.202 Carica papaya HOM05D014920 ORTHO05D009802 6.7e-07 58.2 88 44.3
Manes.02G062300 Manihot esculenta HOM05D008889 ORTHO05D009956 6.7e-07 58.2 69 47.8
Nitab4.5_0005310g0050 Nicotiana tabacum HOM05D011353 ORTHO05D014734 8.7e-07 57.8 85 44.7
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 1.1e-06 57.4 73 47.9
Dinv36837 Davidia involucrata HOM05D008563 ORTHO05D009802 1.1e-06 57.4 93 40.9
Sabra08G0086100 Salix brachista HOM05D018804 ORTHO05D013371 1.1e-06 57.4 59 55.9
FAN13G1731 Fragaria x ananassa HOM05D021981 ORTHO05D009802 1.5e-06 57.0 80 50.0
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 1.9e-06 56.6 82 45.1
Glyma.02G126600 Glycine max HOM05D018202 ORTHO05D020778 1.9e-06 56.6 108 38.0
Nitab4.5_0000149g0140 Nicotiana tabacum HOM05D011353 ORTHO05D009802 1.9e-06 56.6 96 41.7
FvH4_5g13090 Fragaria vesca HOM05D021981 ORTHO05D009802 2.5e-06 56.2 78 47.4
FAN08G2886 Fragaria x ananassa HOM05D021981 ORTHO05D009802 2.5e-06 56.2 80 50.0
FAN18G3782 Fragaria x ananassa HOM05D021981 ORTHO05D009802 2.5e-06 56.2 78 47.4
Gohir.A13G093400 Gossypium hirsutum HOM05D018013 ORTHO05D013371 2.5e-06 56.2 74 47.3
Nitab4.5_0000646g0100 Nicotiana tabacum HOM05D014920 ORTHO05D009802 2.5e-06 56.2 94 40.4
PSO017G1525 Papaver somniferum HOM05D042328 ORTHO05D009956 2.5e-06 56.2 97 40.2
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 3.3e-06 55.8 73 45.2
Potri.010G134800 Populus trichocarpa HOM05D018804 ORTHO05D013371 3.3e-06 55.8 60 51.7
RcHm_v2.0_Chr7g0184051 Rosa chinensis HOM05D021981 ORTHO05D009802 3.3e-06 55.8 73 52.1
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 3.3e-06 55.8 102 40.2
TPR.G3280 Trifolium pratense HOM05D008889 ORTHO05D009956 3.3e-06 55.8 75 42.7
Carub.0009s0002 Capsella rubella HOM05D009227 ORTHO05D009956 4.3e-06 55.5 89 37.1
HanXRQChr09g0270551 Helianthus annuus HOM05D038017 ORTHO05D009802 4.3e-06 55.5 78 43.6
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 5.6e-06 55.1 73 43.8
CAN.G982.29 Capsicum annuum HOM05D000541 ORTHO05D000137 5.6e-06 55.1 70 50.0
Gohir.A08G052300 Gossypium hirsutum HOM05D008889 ORTHO05D009956 5.6e-06 55.1 87 40.2
Gohir.D08G061900 Gossypium hirsutum HOM05D009227 ORTHO05D009956 5.6e-06 55.1 87 40.2
PSO478G2273 Papaver somniferum HOM05D042328 ORTHO05D009956 5.6e-06 55.1 97 39.2
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 5.6e-06 55.1 95 40.0
Prupe.5G211600 Prunus persica HOM05D008563 ORTHO05D009802 5.6e-06 55.1 95 43.2
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 7.4e-06 54.7 96 40.6
Carub.0007s3707 Capsella rubella HOM05D009227 ORTHO05D009956 7.4e-06 54.7 73 45.2
Gohir.D13G089850 Gossypium hirsutum HOM05D018013 ORTHO05D013371 9.6e-06 54.3 74 45.9
Gorai.004G064000 Gossypium raimondii HOM05D009227 ORTHO05D009956 9.6e-06 54.3 66 45.5
Gorai.013G103000 Gossypium raimondii HOM05D018013 ORTHO05D013371 9.6e-06 54.3 74 45.9
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 9.6e-06 54.3 68 48.5


User provided reference genes

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