Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 9.0e-145 516.9 264 100.0
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 2.3e-92 342.8 276 71.4
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 7.5e-91 337.8 259 74.1
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 2.9e-87 325.9 284 65.1
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 2.3e-79 299.7 284 62.3
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.8e-79 298.9 288 61.5
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 5.0e-79 298.5 290 64.1
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 1.7e-74 283.5 292 62.3
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 2.3e-63 246.5 184 73.4
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 4.4e-59 232.3 175 74.3
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 3.9e-55 219.2 267 51.3
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 4.7e-53 212.2 190 67.4
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 4.0e-52 209.1 289 47.8
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 1.5e-51 207.2 285 50.2
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.5e-51 207.2 280 49.6
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 7.6e-51 204.9 263 49.8
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 7.1e-49 198.4 287 48.1
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 2.7e-48 196.4 283 48.1
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 3.9e-47 192.6 291 45.0
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 5.1e-47 192.2 286 47.2
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 1.9e-46 190.3 288 44.8
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 3.3e-46 189.5 291 44.7
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.1e-45 186.8 290 44.1
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 4.7e-45 185.7 272 45.2
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 6.2e-45 185.3 184 59.8
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 6.8e-44 181.8 296 44.3
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 6.8e-44 181.8 283 43.5
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 1.2e-43 181.0 279 43.0
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 3.4e-43 179.5 292 44.5
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 4.4e-43 179.1 276 45.3
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 9.9e-43 177.9 288 46.5
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 1.7e-42 177.2 291 42.6
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 4.9e-42 175.6 286 43.0
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 6.4e-42 175.3 308 41.2
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 1.4e-41 174.1 292 44.5
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 2.7e-40 169.9 287 44.9
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 3.5e-40 169.5 246 48.4
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 4.6e-40 169.1 247 46.6
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 7.8e-40 168.3 281 42.0
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 7.8e-40 168.3 334 39.2
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 1.3e-39 167.5 312 41.0
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 3.3e-38 162.9 280 40.4
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.1e-36 157.9 288 38.9
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.4e-36 157.5 299 41.5
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 5.3e-36 155.6 181 54.7
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 9.0e-36 154.8 284 42.3
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 9.0e-36 154.8 284 42.3
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.5e-35 154.1 287 41.8
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.5e-35 154.1 285 42.5
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.5e-35 154.1 299 37.5
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.0e-35 153.7 186 54.8
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 4.5e-35 152.5 293 41.0
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 4.5e-35 152.5 276 40.9
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.3e-34 151.0 280 44.6
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 2.2e-34 150.2 288 42.4
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.2e-34 150.2 285 42.1
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 2.2e-34 150.2 284 41.9
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.1e-33 147.9 182 54.9
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.9e-33 147.1 276 40.9
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.6e-32 144.1 274 41.6
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.7e-32 143.3 304 34.5
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.5e-32 142.9 274 40.5
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.3e-31 140.2 183 53.6
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 3.0e-31 139.8 182 48.4
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 3.0e-31 139.8 274 39.4
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 5.1e-31 139.0 173 54.9
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 8.7e-31 138.3 273 39.6
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 2.5e-30 136.7 278 39.2
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 3.3e-30 136.3 288 37.8
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 3.3e-30 136.3 288 38.2
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 3.6e-29 132.9 290 39.0
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.6e-29 132.9 211 45.5
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.8e-28 130.6 178 48.3
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 2.6e-27 126.7 176 48.3
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 3.4e-27 126.3 172 50.6
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 5.8e-27 125.6 196 45.9
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 1.7e-26 124.0 177 47.5
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 4.9e-26 122.5 178 46.1
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 1.3e-23 114.4 210 37.6
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 4.3e-22 109.4 193 44.0
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 8.1e-21 105.1 113 57.5
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 5.3e-20 102.4 296 36.8
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 6.9e-20 102.1 189 39.7
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 6.9e-20 102.1 282 35.1
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 3.4e-19 99.8 124 51.6
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 5.8e-19 99.0 292 35.6
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 2.2e-18 97.1 287 32.1
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.2e-18 97.1 295 35.3
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 2.9e-18 96.7 112 50.9
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 1.2e-16 91.3 234 36.8
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 3.5e-16 89.7 119 47.9
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 4.6e-16 89.4 182 44.5
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 1.3e-15 87.8 178 37.6
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 3.0e-15 86.7 160 41.9
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 5.1e-15 85.9 181 40.9
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 6.7e-15 85.5 205 34.1
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 8.7e-15 85.1 281 29.9
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 8.7e-15 85.1 192 35.4
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 4.3e-14 82.8 273 27.5
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 4.3e-14 82.8 272 29.4
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 4.3e-14 82.8 272 29.4
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 9.6e-14 81.6 271 30.6
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 1.3e-13 81.3 278 28.1
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 3.7e-13 79.7 272 29.8
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.8e-12 77.4 179 36.9
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 9.0e-12 75.1 199 33.2
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 9.0e-12 75.1 183 37.2
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 1.5e-11 74.3 67 58.2
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.0e-11 73.9 219 30.1
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 7.6e-11 72.0 291 28.2
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 2.9e-10 70.1 281 33.1
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 5.0e-10 69.3 203 37.4
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 8.5e-10 68.6 193 33.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.6e-08 64.3 127 37.0
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 3.6e-08 63.2 204 35.8
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 3.0e-07 60.1 278 27.0
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 3.0e-07 60.1 75 45.3
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 3.9e-07 59.7 167 32.3


User provided reference genes

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