Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.3e-171 606.3 312 100.0
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 3.5e-156 555.1 312 89.4
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 3.9e-155 551.6 312 87.2
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 2.4e-152 542.3 314 87.9
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 4.9e-142 508.1 309 81.9
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.8e-139 499.6 310 78.4
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 6.9e-136 487.6 311 77.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 6.9e-136 487.6 308 77.9
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 7.6e-135 484.2 312 76.9
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-133 479.9 312 76.3
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 4.2e-133 478.4 317 74.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 3.5e-132 475.3 323 72.8
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 7.9e-132 474.2 311 75.9
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.3e-131 473.4 306 77.1
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 3.9e-131 471.9 312 74.4
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 6.7e-131 471.1 318 73.0
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.1e-130 470.3 308 75.3
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 9.6e-130 467.2 317 72.2
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.7e-129 465.3 312 73.1
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.8e-129 464.9 312 72.8
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.8e-128 463.0 307 73.6
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.8e-128 463.0 314 71.7
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.8e-128 463.0 318 71.4
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.1e-128 462.2 322 73.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.1e-128 462.2 322 73.0
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 3.1e-128 462.2 315 73.7
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.3e-128 461.5 319 71.8
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 6.9e-128 461.1 319 72.1
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.4e-127 458.8 322 72.7
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 4.5e-127 458.4 319 71.5
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 4.5e-127 458.4 318 70.8
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 7.6e-127 457.6 309 71.5
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 7.6e-127 457.6 325 71.4
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.0e-126 457.2 315 71.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.7e-126 456.4 316 72.5
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.9e-126 455.7 319 71.2
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 2.9e-126 455.7 315 71.4
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 5.0e-126 454.9 320 70.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.0e-126 454.9 299 74.2
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 6.5e-126 454.5 315 71.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 8.5e-126 454.1 315 71.7
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.9e-125 453.0 309 70.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.2e-125 452.2 311 72.0
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 4.2e-125 451.8 313 71.6
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 9.3e-125 450.7 324 70.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.6e-124 449.9 296 75.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.7e-124 449.1 307 70.4
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.6e-124 448.7 312 72.8
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 7.9e-124 447.6 307 72.3
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.3e-123 446.8 319 69.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 1.8e-123 446.4 314 70.7
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 8.7e-123 444.1 311 71.4
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.5e-122 442.6 312 68.9
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 2.5e-122 442.6 312 71.8
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.3e-122 442.2 328 67.4
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 5.7e-122 441.4 315 69.5
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 7.4e-122 441.0 314 70.1
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.3e-121 440.3 309 69.9
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.6e-121 439.9 314 70.1
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.6e-121 439.9 311 69.5
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 4.8e-121 438.3 312 71.2
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.1e-120 437.2 317 68.1
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.4e-120 436.8 310 70.3
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 6.9e-120 434.5 314 69.4
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.2e-119 433.7 310 70.6
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.0e-119 433.0 312 68.9
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 2.6e-119 432.6 314 68.5
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.7e-118 429.9 312 69.9
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 2.9e-118 429.1 311 67.8
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 5.0e-118 428.3 314 68.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-118 428.3 306 68.6
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.5e-117 426.0 316 68.0
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 7.2e-117 424.5 340 63.8
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.4e-115 420.2 319 67.4
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 5.1e-115 418.3 307 65.5
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 7.4e-114 414.5 282 71.6
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 7.4e-114 414.5 314 65.6
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.7e-113 413.3 315 65.1
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 3.7e-113 412.1 315 65.1
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 4.8e-113 411.8 307 64.5
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 4.8e-113 411.8 315 65.1
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 4.8e-113 411.8 309 67.3
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 6.3e-113 411.4 338 63.3
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 8.2e-113 411.0 316 65.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.1e-112 410.6 324 65.1
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 5.3e-112 408.3 316 64.6
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 5.3e-112 408.3 309 67.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 6.9e-112 407.9 306 68.0
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.2e-111 407.1 315 64.1
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.2e-105 386.3 333 60.7
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 4.1e-104 382.1 314 61.8
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.5e-101 373.6 307 63.2
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 9.4e-101 370.9 377 55.2
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.8e-99 364.4 279 64.2
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.5e-98 363.6 276 65.6
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.8e-96 356.7 314 58.3
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 5.3e-96 355.1 299 61.9
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 9.1e-96 354.4 303 58.1
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.0e-94 350.9 302 57.0
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 8.0e-92 341.3 232 72.4
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.8e-91 340.1 276 63.8
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.5e-90 337.0 302 57.0
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.5e-90 337.0 302 54.6
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 7.5e-90 334.7 230 71.3
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.1e-88 330.9 304 55.3
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 9.8e-82 307.8 230 67.0
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.8e-75 287.0 231 61.5
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.7e-73 280.4 351 44.7
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.5e-71 272.7 187 71.7
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 4.3e-69 265.8 336 44.9
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 1.2e-68 264.2 187 66.8
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.3e-67 260.0 197 65.0
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.5e-66 257.3 205 63.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 5.2e-51 205.7 153 65.4
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.2e-49 200.3 217 48.8
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.4e-48 197.6 231 51.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.6e-44 184.1 286 40.2
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.6e-42 176.8 188 54.3
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.4e-42 176.4 161 56.5
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 7.6e-42 175.3 304 41.1
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 1.1e-37 161.4 106 70.8
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.6e-36 157.5 301 35.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-36 156.4 121 71.9
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 3.5e-31 139.8 124 60.5
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 3.1e-27 126.7 121 62.8
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 7.1e-24 115.5 84 71.4
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.6e-21 105.9 83 67.5
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.6e-21 105.1 83 66.3
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.7e-20 103.2 146 40.4
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 8.2e-20 102.1 164 42.7
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 4.0e-19 99.8 68 70.6
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.5e-18 97.8 117 48.7
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.4e-18 96.7 76 63.2
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 7.6e-18 95.5 73 65.8
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 1.0e-17 95.1 109 46.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 1.1e-16 91.7 70 67.1
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.4e-16 91.3 70 70.0
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.5e-16 90.5 62 69.4
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.5e-15 86.7 60 70.0
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 6.1e-07 59.3 45 66.7


User provided reference genes

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