Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 9.6e-141 503.4 246 100.0
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.9e-120 436.0 246 88.6
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 3.4e-114 415.2 249 85.9
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 3.4e-114 415.2 249 85.9
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 3.7e-100 368.6 248 75.8
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 2.0e-98 362.8 246 74.8
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 1.7e-97 359.8 251 72.5
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 6.7e-94 347.8 209 81.8
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 9.7e-93 344.0 208 81.7
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 3.5e-90 335.5 238 70.6
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 3.8e-89 332.0 234 70.1
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 8.5e-89 330.9 317 57.7
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 2.3e-86 322.8 233 69.5
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 3.3e-85 318.9 238 67.2
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 5.7e-85 318.2 238 68.1
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 7.5e-85 317.8 241 67.2
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 2.8e-84 315.8 238 67.2
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 2.8e-84 315.8 238 67.2
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 2.8e-84 315.8 238 67.6
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 3.7e-84 315.5 237 67.5
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 4.8e-84 315.1 236 69.5
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 4.8e-84 315.1 240 66.7
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 6.3e-84 314.7 238 67.6
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 8.2e-84 314.3 239 64.4
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.4e-83 312.8 238 67.6
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 3.1e-83 312.4 240 67.1
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 5.3e-83 311.6 233 67.8
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 5.3e-83 311.6 235 70.2
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 9.1e-83 310.8 238 68.1
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 1.6e-82 310.1 235 69.8
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 1.6e-82 310.1 235 69.8
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 2.7e-82 309.3 240 66.7
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 1.3e-81 307.0 239 66.5
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 2.2e-81 306.2 235 69.4
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 5.0e-81 305.1 236 66.9
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 8.5e-81 304.3 233 66.5
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 1.1e-80 303.9 233 66.5
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 1.9e-80 303.1 235 68.9
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 7.2e-80 301.2 238 63.9
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.6e-79 300.1 233 66.1
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 2.1e-79 299.7 234 64.5
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.7e-79 299.3 238 63.9
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 3.6e-79 298.9 238 63.0
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 3.6e-79 298.9 222 72.1
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 6.1e-79 298.1 236 68.6
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 8.0e-79 297.7 235 66.4
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 2.3e-78 296.2 239 63.2
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 2.3e-78 296.2 221 70.1
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 2.3e-78 296.2 256 61.7
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.5e-77 293.5 240 63.8
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 7.5e-77 291.2 240 62.9
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 7.5e-77 291.2 231 65.8
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.7e-76 290.0 241 64.7
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 1.7e-76 290.0 239 64.0
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 3.7e-76 288.9 242 65.3
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 4.8e-76 288.5 244 65.2
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.4e-75 286.2 240 63.8
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 9.1e-75 284.3 240 62.1
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 1.2e-74 283.9 239 64.0
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 1.6e-74 283.5 237 64.6
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 3.5e-74 282.3 247 61.5
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 4.5e-74 282.0 243 61.7
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 5.9e-74 281.6 245 62.0
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 3.8e-73 278.9 242 62.0
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 5.0e-73 278.5 240 61.2
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 1.9e-72 276.6 240 60.8
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 2.5e-72 276.2 244 60.7
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 5.5e-72 275.0 237 61.2
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 7.2e-72 274.6 240 61.7
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.2e-71 273.9 272 55.9
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 2.1e-71 273.1 311 49.5
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 2.1e-71 273.1 248 60.1
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 4.7e-71 271.9 240 60.8
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.3e-70 269.6 198 71.7
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 2.3e-70 269.6 243 60.5
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 5.7e-69 265.0 241 57.3
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 8.3e-68 261.2 209 62.2
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 2.0e-66 256.5 209 61.2
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 1.0e-65 254.2 238 56.7
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 5.0e-65 251.9 242 56.2
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.1e-64 250.8 177 67.8
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 1.6e-63 246.9 178 69.1
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 3.0e-62 242.7 159 74.2
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 4.0e-62 242.3 178 68.5
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.2e-61 240.7 258 51.9
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 7.5e-61 238.0 248 52.4
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 1.3e-60 237.3 157 73.9
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.3e-60 237.3 159 73.6
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 8.3e-60 234.6 234 53.4
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 9.2e-59 231.1 170 68.8
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.7e-58 229.6 184 65.2
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 3.3e-56 222.6 158 69.0
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 1.2e-55 220.7 182 65.4
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 2.7e-50 203.0 242 50.4
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 1.2e-45 187.6 194 54.6
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 2.0e-45 186.8 116 79.3
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 5.1e-41 172.2 137 62.8
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.3e-33 147.5 135 57.0
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 2.3e-33 146.7 121 66.1
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 4.6e-26 122.5 103 68.9
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 3.9e-25 119.4 72 83.3
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 4.3e-24 115.9 114 57.0
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 2.6e-21 106.7 80 65.0
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 2.6e-21 106.7 91 60.4
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 9.3e-19 98.2 75 65.3
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 6.7e-17 92.0 60 76.7
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 4.9e-12 75.9 62 59.7


User provided reference genes

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