Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 5.7e-199 697.6 407 100.0
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 8.7e-139 497.7 401 74.1
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.0e-119 433.3 409 64.5
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.4e-91 340.9 386 60.4
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 4.1e-88 329.3 374 59.1
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.1e-84 317.0 374 58.0
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 8.8e-83 311.6 373 60.1
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 2.0e-79 300.4 374 49.5
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 5.5e-77 292.4 365 57.3
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 7.2e-77 292.0 359 58.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 6.2e-60 235.7 360 51.4
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 8.9e-59 231.9 358 48.9
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 5.6e-53 212.6 358 41.9
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.1e-52 210.7 356 39.0
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.5e-50 204.5 358 40.2
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 9.2e-48 195.3 363 38.0
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.0e-46 191.8 380 36.3
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.0e-46 191.8 358 38.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.3e-46 191.4 361 38.2
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.7e-46 191.0 358 38.0
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.0e-46 190.3 355 36.6
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.9e-46 189.9 356 37.6
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 6.6e-46 189.1 367 41.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.9e-45 187.6 369 37.9
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.5e-45 187.2 355 39.2
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.6e-44 184.5 362 36.7
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.1e-43 181.8 359 34.8
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.4e-43 181.4 359 37.6
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.8e-43 181.0 351 38.2
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.4e-43 180.6 363 37.5
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.1e-43 180.3 375 39.7
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 5.2e-43 179.5 375 36.0
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.5e-42 177.9 366 35.5
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 2.6e-42 177.2 391 35.5
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.4e-42 176.4 383 36.3
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.4e-42 176.4 367 35.4
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.8e-42 176.0 383 35.2
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.8e-42 176.0 356 36.5
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.3e-41 174.9 313 36.1
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.3e-41 174.9 359 37.0
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.2e-41 174.1 357 35.9
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.2e-41 174.1 358 34.9
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.9e-41 173.7 363 38.0
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 4.9e-41 172.9 365 35.3
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 6.4e-41 172.6 317 36.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.9e-40 171.0 383 35.0
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 3.2e-40 170.2 371 34.2
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 9.3e-40 168.7 363 36.1
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.2e-39 168.3 358 35.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.1e-39 167.5 370 36.2
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 2.7e-39 167.2 383 36.0
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.6e-39 166.4 361 34.1
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.6e-39 166.4 324 34.0
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.3e-38 164.9 371 33.7
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 3.0e-38 163.7 312 38.1
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 8.7e-38 162.2 329 35.3
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.3e-36 158.3 355 35.8
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.1e-36 157.5 361 35.2
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.1e-36 157.5 357 33.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.8e-36 157.1 383 35.2
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 8.1e-36 155.6 359 33.7
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.4e-35 154.8 374 35.8
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.1e-35 153.7 378 34.1
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 5.3e-35 152.9 366 38.3
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 4.4e-34 149.8 356 33.1
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.3e-33 148.3 234 40.6
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.7e-33 147.9 358 33.5
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 2.2e-33 147.5 357 35.9
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.9e-33 147.1 357 31.7
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 6.4e-33 146.0 219 42.0
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.1e-32 145.2 357 35.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.4e-32 144.8 359 31.5
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.9e-32 144.4 356 32.6
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.4e-32 144.1 313 33.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 3.2e-32 143.7 357 32.5
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 4.2e-32 143.3 360 36.1
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 9.3e-32 142.1 360 33.6
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 4.6e-31 139.8 377 30.2
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 6.0e-31 139.4 360 35.3
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 6.6e-30 136.0 312 34.3
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 8.7e-30 135.6 356 31.7
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.9e-29 134.4 357 31.1
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 5.6e-29 132.9 376 32.4
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.3e-28 131.7 360 36.7
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 3.6e-28 130.2 360 35.0
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 4.8e-28 129.8 358 30.7
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 4.8e-28 129.8 356 30.1
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.2e-28 129.4 360 35.0
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 8.1e-28 129.0 321 35.2
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.4e-27 128.3 360 30.3
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 9.0e-27 125.6 359 30.9
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.2e-26 125.2 385 30.1
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 1.2e-26 125.2 376 30.9
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-26 124.8 361 37.4
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 2.0e-26 124.4 322 33.9
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 3.4e-26 123.6 361 37.1
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.4e-26 123.6 310 31.0
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 4.5e-26 123.2 395 32.7
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 9.9e-26 122.1 233 36.5
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.7e-25 121.3 361 37.1
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 4.9e-25 119.8 309 36.2
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.4e-24 118.2 311 29.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.9e-24 117.9 234 35.5
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 4.2e-24 116.7 233 36.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.1e-23 114.4 245 35.9
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.0e-22 112.1 382 28.0
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 3.9e-22 110.2 234 33.3
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 8.7e-22 109.0 353 33.1
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 4.8e-20 103.2 379 34.3
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-19 102.1 358 29.1
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 3.1e-19 100.5 373 35.9
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.0e-19 100.1 353 34.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.6e-18 97.4 230 31.7
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 5.8e-18 96.3 396 28.3
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.3e-17 95.1 224 32.1
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 3.8e-17 93.6 331 27.8
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 4.9e-17 93.2 310 30.0
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 7.1e-16 89.4 351 26.2
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.2e-15 88.6 120 40.8
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.2e-15 88.6 378 32.0
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 9.6e-13 79.0 364 31.0
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 1.3e-12 78.6 227 27.8
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 2.1e-12 77.8 77 55.8
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.8e-12 77.4 164 37.8
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 3.1e-11 73.9 211 31.8
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 5.3e-11 73.2 244 25.0
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 5.3e-11 73.2 244 27.5
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 6.9e-11 72.8 286 26.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 6.9e-11 72.8 229 27.9
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.2e-10 72.0 228 29.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 2.0e-10 71.2 160 32.5
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.0e-09 68.9 246 30.1
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 3.8e-09 67.0 160 34.4
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 3.2e-08 63.9 207 26.6
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 3.2e-08 63.9 93 35.5
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 5.5e-08 63.2 373 25.2
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 4.6e-07 60.1 370 28.9
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 5.1e-06 56.6 49 55.1


User provided reference genes

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