Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 7.2e-57 223.8 121 100.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 8.8e-55 216.9 120 95.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.0e-54 215.7 121 95.0
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.8e-53 211.8 121 92.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.1e-52 209.9 121 93.4
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.6e-51 206.1 121 92.6
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.5e-51 204.5 121 92.6
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.9e-51 204.1 119 89.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.9e-51 204.1 119 89.9
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-50 203.4 121 90.1
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 6.5e-50 200.7 121 88.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 8.5e-50 200.3 119 91.6
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-49 199.9 119 89.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.2e-49 198.0 121 87.6
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.6e-48 196.1 121 84.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 3.6e-48 194.9 125 86.4
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 3.6e-48 194.9 119 86.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.8e-47 192.6 119 85.7
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 1.8e-47 192.6 121 83.5
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.8e-47 192.6 119 82.4
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 2.3e-47 192.2 119 85.7
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.3e-47 192.2 121 84.3
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.3e-47 192.2 118 86.4
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.0e-47 191.4 119 86.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.0e-47 191.4 119 86.6
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 5.2e-47 191.0 116 85.3
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 6.8e-47 190.7 121 85.1
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.2e-46 189.9 120 85.0
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-46 189.5 121 84.3
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.0e-46 189.1 116 85.3
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-46 188.3 114 86.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.4e-46 188.0 114 86.0
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 4.4e-46 188.0 120 84.2
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 4.4e-46 188.0 120 84.2
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 4.4e-46 188.0 106 92.5
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.4e-46 188.0 119 81.5
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 5.7e-46 187.6 117 85.5
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 9.8e-46 186.8 119 84.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 1.3e-45 186.4 120 84.2
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 1.3e-45 186.4 120 84.2
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.3e-45 186.4 121 82.6
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.7e-45 186.0 119 84.9
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.7e-45 186.0 106 94.3
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.7e-45 186.0 121 82.6
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.2e-45 185.7 121 82.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.2e-45 185.7 121 82.6
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.2e-45 185.7 121 82.6
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.2e-45 185.7 119 82.4
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.8e-45 185.3 116 82.8
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.8e-45 185.3 121 83.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.7e-45 184.9 120 80.0
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 4.8e-45 184.5 118 84.7
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 6.3e-45 184.1 118 83.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 6.3e-45 184.1 118 83.1
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.1e-44 183.3 119 81.5
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.1e-44 183.3 119 80.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-44 183.0 122 82.0
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.1e-44 181.8 120 82.5
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 3.1e-44 181.8 118 82.2
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 7.0e-44 180.6 119 79.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 81.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.6e-43 179.5 119 79.8
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 3.5e-43 178.3 119 79.0
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 5.9e-43 177.6 115 80.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.7e-43 177.2 119 79.0
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-42 176.8 119 79.8
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-42 176.8 119 79.8
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.9e-42 175.3 117 77.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.9e-42 175.3 121 76.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 5.0e-42 174.5 119 74.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 5.0e-42 174.5 119 79.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 8.5e-42 173.7 119 79.8
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.5e-42 173.7 120 77.5
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.1e-41 173.3 118 79.7
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-41 172.9 113 78.8
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.9e-41 172.6 117 79.5
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.9e-41 172.6 101 87.1
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.2e-41 171.8 119 79.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 4.2e-41 171.4 102 84.3
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.2e-41 171.4 100 87.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.2e-41 171.4 100 87.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.2e-41 171.4 100 87.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.2e-41 171.4 100 87.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 7.2e-41 170.6 115 78.3
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 9.5e-41 170.2 105 82.9
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.5e-41 170.2 119 76.5
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 9.5e-41 170.2 118 78.8
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.2e-40 169.9 111 79.3
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.6e-40 169.5 100 86.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.6e-40 168.3 120 75.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 4.7e-40 167.9 103 81.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.4e-39 166.4 115 73.9
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.4e-39 166.4 112 73.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.3e-39 165.6 109 76.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.0e-39 164.9 116 73.3
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.0e-39 164.9 125 72.0
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 5.2e-39 164.5 106 80.2
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.2e-38 163.3 115 73.9
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.2e-38 163.3 116 73.3
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.0e-38 162.5 115 73.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.6e-38 162.2 116 74.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.6e-38 162.2 116 74.1
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 4.4e-38 161.4 119 75.6
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 7.5e-38 160.6 120 72.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 7.5e-38 160.6 116 72.4
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 7.5e-38 160.6 116 72.4
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 9.8e-38 160.2 118 69.5
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.3e-37 159.8 98 80.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.3e-37 159.8 116 72.4
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.2e-37 159.1 118 72.9
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 6.3e-37 157.5 116 74.1
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 6.3e-37 157.5 120 70.8
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 8.3e-37 157.1 109 71.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 7.0e-36 154.1 105 80.0
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.5e-35 151.4 113 72.6
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 5.9e-35 151.0 96 79.2
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 5.0e-34 147.9 121 67.8
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 8.6e-34 147.1 105 76.2
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-33 146.7 85 85.9
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.9e-33 146.0 121 65.3
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 4.3e-33 144.8 106 74.5
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.3e-33 144.1 89 86.5
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 8.3e-29 130.6 103 67.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 3.5e-27 125.2 112 58.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.8e-27 124.0 88 76.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.0e-26 122.1 90 75.6
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.0e-26 122.1 90 75.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 5.0e-26 121.3 103 61.2
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 6.2e-24 114.4 71 81.7
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 8.0e-24 114.0 67 86.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 3.1e-23 112.1 117 64.1
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.0e-23 111.7 69 81.2
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 2.0e-22 109.4 68 79.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.7e-21 106.3 100 55.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 4.9e-21 104.8 70 75.7
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 3.2e-20 102.1 64 73.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-19 99.4 74 71.6
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.0e-18 94.7 57 84.2
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-18 94.4 73 69.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-17 93.6 85 62.4
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 7.3e-17 90.9 56 80.4
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-16 89.7 68 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 8.9e-15 84.0 74 58.1
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 2.6e-14 82.4 103 47.6
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 7.5e-14 80.9 50 86.0
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 4.9e-13 78.2 119 42.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.4e-13 77.8 82 56.1
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.3e-10 70.1 53 66.0
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.7e-10 69.7 69 58.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.7e-10 69.7 60 58.3
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 5.1e-10 68.2 56 62.5
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 6.6e-10 67.8 91 47.3
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.6e-10 67.4 44 75.0
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-09 65.5 75 52.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.6e-08 63.2 122 34.4
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.7e-08 61.6 38 78.9
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 1.5e-06 56.6 44 63.6
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 2.6e-06 55.8 46 65.2
arahy.Tifrunner.gnm1.ann1.PD5CRZ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.8e-06 54.7 43 67.4


User provided reference genes

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