Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 7.4e-124 447.2 224 100.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 5.9e-105 384.4 224 86.2
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.0e-104 383.6 222 85.1
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 5.5e-103 377.9 226 85.8
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 3.3e-87 325.5 225 74.7
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 3.3e-87 325.5 225 74.2
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 7.0e-82 307.8 227 69.2
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 8.6e-80 300.8 225 66.2
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.1e-79 300.4 224 67.9
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 9.5e-79 297.4 170 85.9
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.8e-77 293.1 227 67.4
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 6.8e-77 291.2 224 66.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 8.9e-77 290.8 234 62.4
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.2e-76 290.4 225 65.3
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.5e-76 290.0 227 67.0
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.0e-76 289.7 233 63.1
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.6e-76 289.3 234 62.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 3.4e-76 288.9 227 67.0
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.4e-74 282.7 227 65.6
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 5.4e-74 281.6 230 61.7
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 1.6e-73 280.0 230 65.7
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 2.7e-73 279.3 233 60.5
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 6.0e-73 278.1 231 62.8
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.3e-72 276.2 214 66.4
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.1e-71 273.9 232 59.5
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 9.5e-71 270.8 232 60.8
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 2.1e-70 269.6 240 59.2
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.1e-70 269.6 215 65.6
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.6e-70 268.9 228 58.3
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 4.7e-70 268.5 231 59.7
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 8.1e-70 267.7 231 59.3
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 4.0e-69 265.4 233 60.9
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 5.2e-69 265.0 214 64.0
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.5e-68 263.5 229 59.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.0e-68 263.1 215 60.9
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.0e-68 263.1 208 63.9
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.4e-68 262.3 219 61.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 4.4e-68 261.9 215 60.0
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 5.8e-68 261.5 213 62.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 9.8e-68 260.8 234 58.1
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 9.8e-68 260.8 220 60.9
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.2e-67 259.6 232 59.1
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.7e-67 258.8 228 57.5
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 4.9e-67 258.5 216 61.1
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 8.3e-67 257.7 231 57.6
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.1e-66 257.3 212 60.4
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 3.2e-66 255.8 232 57.3
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 3.2e-66 255.8 216 58.3
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.2e-66 255.8 219 61.6
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.2e-66 255.8 217 58.1
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 9.2e-66 254.2 234 58.1
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.2e-65 253.8 218 60.1
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.2e-65 253.8 230 55.7
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.2e-65 253.8 208 60.6
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.1e-65 253.1 216 58.3
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 2.1e-65 253.1 216 57.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 6.0e-65 251.5 218 59.6
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 6.0e-65 251.5 218 60.6
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.0e-64 250.8 222 58.6
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.5e-63 246.1 215 57.7
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.5e-63 246.1 217 56.2
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 3.3e-63 245.7 215 59.1
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 3.3e-63 245.7 230 56.1
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.3e-63 245.4 217 57.6
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 7.3e-63 244.6 217 55.8
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 9.5e-63 244.2 216 58.8
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.6e-62 243.4 215 60.0
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 4.7e-62 241.9 234 55.1
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 8.1e-62 241.1 229 55.5
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 8.1e-62 241.1 216 58.3
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.1e-61 240.7 220 57.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 2.3e-61 239.6 217 58.5
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 8.9e-61 237.7 216 55.6
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.2e-60 237.3 222 56.3
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 2.0e-60 236.5 225 57.3
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.0e-60 236.5 212 57.1
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 2.9e-59 232.6 216 56.5
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 3.7e-59 232.3 225 55.1
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 4.9e-59 231.9 237 53.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 6.4e-59 231.5 194 60.3
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.4e-58 230.3 226 55.3
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.4e-58 230.3 218 54.6
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 3.2e-58 229.2 233 55.8
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 5.4e-58 228.4 232 54.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 3.5e-57 225.7 229 52.4
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 4.6e-57 225.3 221 52.0
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 4.6e-57 225.3 232 52.6
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.7e-56 223.4 236 53.8
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.3e-56 223.0 217 54.4
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.3e-56 223.0 217 54.4
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.1e-55 220.7 232 51.3
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.9e-55 219.9 224 51.8
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 9.6e-55 217.6 209 52.6
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.1e-53 214.2 223 54.3
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 4.0e-53 212.2 241 51.5
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 2.2e-51 206.5 278 44.2
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.9e-51 206.1 214 50.5
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.2e-50 202.2 227 49.8
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.6e-49 200.3 285 43.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 2.7e-49 199.5 231 50.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 4.6e-49 198.7 232 49.1
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.6e-46 190.3 217 50.7
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 5.3e-45 185.3 169 57.4
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 9.0e-45 184.5 229 50.2
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.5e-44 183.7 164 54.3
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 4.4e-44 182.2 216 48.6
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.7e-43 180.3 229 45.9
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.9e-43 179.5 221 47.1
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 1.0e-40 171.0 216 44.4
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 6.6e-40 168.3 250 42.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.0e-37 159.1 227 42.3
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 2.0e-36 156.8 224 42.4
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 5.8e-36 155.2 122 61.5
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.7e-35 153.7 141 58.9
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.6e-33 145.6 229 39.7
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 2.1e-30 136.7 237 40.5
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 2.1e-30 136.7 177 42.9
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 3.7e-30 136.0 128 55.5
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.4e-29 134.0 228 37.7
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.1e-26 124.4 127 54.3
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 2.5e-26 123.2 100 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 7.9e-25 118.2 135 45.9
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.0e-24 116.3 81 65.4
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 9.6e-23 111.3 95 57.9
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 2.8e-22 109.8 208 35.1
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.8e-19 99.4 98 51.0
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 6.5e-19 98.6 137 43.1
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.9e-18 97.1 109 45.0
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.1e-17 92.0 134 43.3
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 1.8e-16 90.5 213 30.0
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 1.9e-15 87.0 175 34.3
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-14 83.6 94 50.0
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 6.9e-13 78.6 134 42.5
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 5.9e-12 75.5 174 28.2
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 2.9e-11 73.2 113 42.5
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 8.5e-11 71.6 104 45.2
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.1e-10 71.2 73 47.9
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.2e-09 67.8 81 46.9
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 4.6e-09 65.9 83 47.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 7.4e-07 58.5 41 61.0


User provided reference genes

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