Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 7.9e-132 473.8 238 100.0
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.9e-106 389.4 239 82.0
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 6.9e-104 380.9 238 81.1
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.5e-103 378.3 219 85.8
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.4e-101 373.2 238 79.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.3e-97 360.1 224 78.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 7.0e-96 354.4 222 76.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.1e-92 342.8 239 74.1
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 8.2e-89 330.9 230 71.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-82 310.5 237 70.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 2.4e-80 302.8 238 63.0
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 2.4e-80 302.8 167 83.8
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.1e-80 302.0 226 64.6
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 5.3e-80 301.6 238 60.1
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.9e-79 298.1 215 66.5
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 5.9e-79 298.1 238 63.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.3e-78 297.0 217 63.1
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.3e-78 297.0 238 61.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.0e-78 295.0 223 63.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 6.5e-78 294.7 232 60.3
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.5e-78 294.3 211 65.4
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 4.2e-77 292.0 215 64.2
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.4e-77 290.8 208 65.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.2e-76 290.4 222 64.0
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.6e-76 290.0 215 63.3
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.1e-76 289.7 218 63.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.7e-76 288.5 214 62.6
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 8.0e-76 287.7 256 55.1
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.0e-75 287.3 208 64.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.0e-75 287.3 190 71.1
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.4e-75 287.0 223 63.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.8e-75 286.6 230 60.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 4.0e-75 285.4 217 61.3
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.8e-75 284.6 238 57.6
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.0e-74 283.1 230 61.3
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.0e-74 283.1 230 58.7
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.4e-74 282.0 205 62.4
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 7.5e-74 281.2 230 57.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.8e-73 279.3 238 56.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.7e-73 278.9 213 62.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 6.3e-73 278.1 232 60.8
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.1e-72 277.3 220 60.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.1e-72 277.3 207 63.8
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.8e-72 276.6 213 61.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.4e-72 276.2 226 58.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.1e-72 275.8 213 61.0
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 5.4e-72 275.0 212 60.8
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 7.0e-72 274.6 244 55.3
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.2e-71 273.9 212 59.9
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.7e-71 272.7 214 60.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 5.9e-71 271.6 208 60.1
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.7e-70 270.0 214 59.3
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.2e-69 265.4 244 56.6
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.2e-69 265.4 212 58.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 5.5e-69 265.0 235 55.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.8e-68 262.7 216 56.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 4.7e-68 261.9 227 55.9
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.0e-67 260.8 219 53.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.3e-67 259.6 201 59.7
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 6.8e-67 258.1 228 56.1
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 5.7e-66 255.0 225 52.4
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.7e-66 255.0 223 55.2
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 7.5e-66 254.6 214 56.5
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-65 253.8 235 52.8
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.3e-65 253.8 213 57.7
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.7e-65 253.4 211 55.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.7e-65 252.3 239 55.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 6.3e-65 251.5 218 54.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.1e-64 250.8 204 55.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-64 250.4 216 53.7
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.4e-64 250.4 216 53.7
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.6e-63 246.9 214 54.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.6e-63 246.9 214 54.2
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.6e-63 246.9 215 52.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.7e-63 246.1 213 54.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 3.5e-63 245.7 218 56.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 4.5e-63 245.4 214 54.2
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 5.9e-63 245.0 206 55.8
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.9e-63 245.0 210 54.8
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 7.8e-63 244.6 205 55.6
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.3e-62 243.8 226 54.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.7e-62 243.4 216 53.2
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.7e-62 243.4 216 53.2
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.7e-62 243.4 235 51.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.7e-62 243.4 182 64.8
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.3e-62 243.0 221 53.4
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.3e-62 243.0 221 53.4
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.9e-62 242.7 216 52.8
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 5.0e-62 241.9 207 55.6
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.6e-62 241.5 222 53.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.6e-62 241.5 235 51.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.5e-61 239.6 212 55.2
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 5.6e-61 238.4 195 54.4
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.2e-60 237.3 237 49.4
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.6e-60 236.9 201 52.2
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.1e-60 236.5 222 52.7
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.0e-59 234.2 209 53.6
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.8e-59 233.4 237 57.4
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.3e-59 233.0 221 52.5
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-58 230.7 218 52.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.0e-58 229.9 236 48.7
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-57 226.9 235 56.6
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.7e-57 226.9 251 51.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.9e-56 223.4 174 57.5
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 5.4e-56 221.9 196 51.0
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 9.2e-56 221.1 205 53.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.2e-55 220.7 185 55.1
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-55 219.9 239 47.3
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.7e-55 219.5 202 56.9
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.7e-55 219.5 209 49.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.3e-54 216.5 164 62.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.9e-54 215.7 207 53.1
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 5.0e-54 215.3 174 58.0
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.0e-54 215.3 206 51.5
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.5e-53 213.8 108 90.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.9e-53 213.4 189 53.4
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.5e-53 213.0 208 49.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.1e-51 207.6 215 49.3
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.6e-50 203.0 240 43.8
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.3e-49 200.7 178 51.1
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 5.4e-48 195.3 185 48.1
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 4.6e-47 192.2 133 64.7
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.8e-47 191.4 257 45.5
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.3e-46 190.7 214 44.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 7.5e-42 174.9 179 49.7
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 3.7e-41 172.6 194 39.7
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.9e-40 170.2 246 40.2
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.4e-40 169.9 139 63.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 3.2e-40 169.5 128 56.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 3.5e-39 166.0 197 44.7
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 6.9e-27 125.2 155 42.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.2e-25 120.2 80 57.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.0e-22 111.3 106 53.8
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.9e-21 107.1 71 60.6
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 6.2e-20 102.1 101 56.4
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 3.1e-19 99.8 58 70.7
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.0e-19 98.2 98 55.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.6e-18 96.7 62 61.3
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 9.9e-18 94.7 52 73.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 8.4e-17 91.7 79 51.9
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.8e-14 84.0 131 44.3
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.0e-14 83.2 82 56.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-13 80.1 44 70.5
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.6e-12 77.4 83 54.2
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.1e-12 77.0 77 54.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 3.4e-10 69.7 64 42.2
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 4.5e-10 69.3 121 33.1
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.0e-09 68.2 50 60.0
TPR.G7694 Trifolium pratense HOM05D004918 ORTHO05D005706 2.2e-09 67.0 38 81.6
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.1e-08 64.7 70 47.1
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.9e-08 63.9 35 68.6
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.2e-08 62.8 158 27.2
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 4.6e-07 59.3 51 51.0
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 7.9e-07 58.5 45 53.3
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.3e-06 57.8 52 57.7


User provided reference genes

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