Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 8.4e-91 337.0 174 100.0
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.2e-38 162.9 95 91.6
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 3.1e-37 159.1 95 87.4
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 1.2e-36 157.1 95 86.3
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 2.9e-35 152.5 96 86.5
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.6e-33 146.7 95 76.8
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 6.1e-33 144.8 97 77.3
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 5.2e-32 141.7 95 77.9
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.6e-31 139.4 96 75.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.3e-30 137.1 96 70.8
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.8e-30 136.0 94 72.3
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 4.8e-30 135.2 96 72.9
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 4.8e-30 135.2 95 73.7
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.3e-30 134.4 96 68.8
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.3e-30 134.4 96 68.8
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.4e-29 133.7 96 71.9
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.8e-29 133.3 95 70.5
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 2.4e-29 132.9 94 73.4
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 2.4e-29 132.9 94 70.2
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 2.4e-29 132.9 95 70.5
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 5.4e-29 131.7 94 69.1
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.4e-29 131.7 96 68.8
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.2e-28 130.6 96 69.8
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.7e-28 129.4 99 68.7
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.7e-27 126.7 79 83.5
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.3e-27 126.3 103 65.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.0e-27 125.2 96 66.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 6.5e-27 124.8 97 69.1
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 6.5e-27 124.8 93 64.5
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 8.6e-27 124.4 96 69.8
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.1e-26 124.0 93 67.7
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.1e-26 124.0 76 85.5
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.5e-26 123.6 93 68.8
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.9e-26 123.2 97 63.9
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.9e-26 123.2 97 63.9
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.2e-25 120.6 98 66.3
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.2e-25 120.6 96 67.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.6e-25 120.2 96 65.6
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.1e-25 119.8 96 64.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 2.8e-25 119.4 95 66.3
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 3.6e-25 119.0 97 64.9
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.6e-25 119.0 97 63.9
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 4.7e-25 118.6 94 69.1
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 4.7e-25 118.6 89 62.9
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 6.1e-25 118.2 97 64.9
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 6.1e-25 118.2 97 61.9
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 6.1e-25 118.2 94 68.1
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 6.1e-25 118.2 95 68.4
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 8.0e-25 117.9 92 66.3
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 8.0e-25 117.9 97 66.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 8.0e-25 117.9 97 66.0
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.0e-24 117.5 96 66.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.4e-24 117.1 97 59.8
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.8e-24 116.7 96 65.6
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 1.8e-24 116.7 96 68.8
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.8e-24 116.7 95 60.0
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.3e-24 116.3 97 63.9
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 2.3e-24 116.3 97 62.9
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.0e-24 115.9 93 61.3
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 3.0e-24 115.9 97 66.0
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 5.2e-24 115.2 94 66.0
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 5.2e-24 115.2 97 60.8
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 5.2e-24 115.2 97 63.9
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 5.2e-24 115.2 94 61.7
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 8.9e-24 114.4 95 66.3
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.2e-23 114.0 97 63.9
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.0e-23 113.2 97 62.9
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 4.4e-23 112.1 93 58.1
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 4.4e-23 112.1 97 64.9
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 4.4e-23 112.1 97 59.8
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 4.4e-23 112.1 95 65.3
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 5.7e-23 111.7 96 63.5
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 7.5e-23 111.3 108 60.2
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 7.5e-23 111.3 97 59.8
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 9.8e-23 110.9 97 57.7
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.3e-22 110.5 94 63.8
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.3e-22 110.5 108 60.2
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.3e-22 110.5 97 61.9
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.7e-22 110.2 97 58.8
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.2e-22 109.8 96 60.4
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.8e-22 109.4 90 66.7
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 6.3e-22 108.2 97 57.7
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 8.3e-22 107.8 98 60.2
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 8.3e-22 107.8 97 60.8
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.1e-21 107.5 97 58.8
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.4e-21 107.1 92 58.7
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.4e-21 107.1 97 58.8
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 3.1e-21 105.9 97 57.7
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 4.1e-21 105.5 97 58.8
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.1e-21 105.5 97 58.8
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.1e-21 105.5 97 58.8
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 5.4e-21 105.1 91 57.1
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 5.4e-21 105.1 93 57.0
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.4e-21 105.1 77 66.2
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.4e-21 105.1 77 66.2
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 7.0e-21 104.8 93 58.1
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 9.2e-21 104.4 97 57.7
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.0e-20 103.2 93 59.1
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.5e-20 102.4 76 68.4
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.9e-20 101.7 97 56.7
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 2.3e-19 99.8 91 56.0
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 2.3e-19 99.8 91 56.0
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 2.3e-19 99.8 91 56.0
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 3.8e-19 99.0 93 53.8
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.1e-18 97.4 89 56.2
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.1e-18 97.4 88 59.1
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.5e-18 97.1 93 53.8
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.5e-18 97.1 93 53.8
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.5e-18 96.3 93 52.7
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 3.3e-18 95.9 91 56.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 4.3e-18 95.5 93 52.7
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 4.3e-18 95.5 93 52.7
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 4.3e-18 95.5 92 59.8
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 5.6e-18 95.1 98 56.1
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 9.5e-18 94.4 94 54.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 4.7e-17 92.0 78 61.5
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 8.0e-17 91.3 90 56.7
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.0e-16 90.9 76 64.5
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 3.0e-16 89.4 92 52.2
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 4.0e-16 89.0 98 51.0
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 6.8e-16 88.2 99 44.4
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 6.8e-16 88.2 94 51.1
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 1.2e-15 87.4 68 61.8
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 4.4e-15 85.5 133 45.9
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 3.7e-14 82.4 53 71.7
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 6.4e-14 81.6 90 48.9
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 2.4e-13 79.7 70 57.1
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.2e-12 77.4 71 62.0
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.5e-12 75.9 87 46.0
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 6.6e-11 71.6 87 47.1
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 8.6e-11 71.2 59 64.4
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.5e-10 70.5 80 53.8
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.9e-10 70.1 81 54.3
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 2.5e-10 69.7 87 48.3
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 2.5e-10 69.7 66 57.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 7.3e-10 68.2 79 50.6
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 9.5e-10 67.8 88 46.6
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.6e-09 67.0 70 50.0
Ca_10512_v3 Cicer arietinum L. HOM05D005070 ORTHO05D005987 3.6e-09 65.9 37 91.9
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 6.2e-09 65.1 87 47.1
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 8.0e-09 64.7 51 58.8
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.8e-08 63.5 54 59.3
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.0e-07 60.1 55 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.9e-06 56.2 66 42.4
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 3.7e-06 55.8 66 53.0


User provided reference genes

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