Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15081 Trifolium pratense HOM05D000294 ORTHO05D000177 4.1e-46 188.0 114 100.0
Medtr2g036170 Medicago truncatula HOM05D000294 ORTHO05D000177 1.9e-30 136.0 109 72.5
Psat1g149560 Pisum sativum HOM05D000294 ORTHO05D000177 6.2e-26 120.9 114 64.9
arahy.Tifrunner.gnm1.ann1.C4KZJS Arachis hypogaea HOM05D000294 ORTHO05D000177 8.4e-23 110.5 109 61.5
arahy.Tifrunner.gnm1.ann1.CX7L4G Arachis hypogaea HOM05D000294 ORTHO05D000177 8.4e-23 110.5 109 61.5
Glyma.09G052400 Glycine max HOM05D000294 ORTHO05D000177 4.2e-22 108.2 109 60.6
Glyma.15G158600 Glycine max HOM05D000294 ORTHO05D000177 1.6e-21 106.3 109 59.6
VMungo1309G0767 Vigna mungo HOM05D000294 ORTHO05D000177 6.0e-21 104.4 110 60.9
Lj6g0001831 Lotus japonicus HOM05D000294 ORTHO05D000177 1.0e-20 103.6 109 58.7
Phvul.009G241300 Phaseolus vulgaris HOM05D000294 ORTHO05D000177 6.6e-20 100.9 112 56.2
Lalb_Chr15g0083871 Lupinus albus HOM05D000294 ORTHO05D000177 3.3e-19 98.6 108 58.3
Lalb_Chr18g0052201 Lupinus albus HOM05D000294 ORTHO05D000177 5.6e-19 97.8 109 55.0
Prupe.4G115600 Prunus persica HOM05D000294 ORTHO05D000177 7.3e-19 97.4 109 50.5
QL11p013119 Quercus lobata HOM05D000294 ORTHO05D000177 4.8e-18 94.7 122 49.2
ClCG01G025620 Citrullus lanatus HOM05D000294 ORTHO05D000177 8.1e-18 94.0 111 54.1
Sed0010860 Sechium edule HOM05D000294 ORTHO05D000177 1.4e-17 93.2 109 50.5
CiPaw.09G074100 Carya illinoinensis HOM05D000294 ORTHO05D000177 2.4e-17 92.4 108 50.0
ClCG03G004210 Citrullus lanatus HOM05D000294 ORTHO05D000177 3.1e-17 92.0 109 51.4
MELO3C007023.2 Cucumis melo HOM05D000294 ORTHO05D000177 3.1e-17 92.0 111 53.2
CsaV3_6G052850 Cucumis sativus L. HOM05D000294 ORTHO05D000177 3.1e-17 92.0 111 53.2
Hma1.2p1_0640F.1_g194140 Hydrangea macrophylla HOM05D000294 ORTHO05D000177 1.2e-16 90.1 109 47.7
Nitab4.5_0006246g0030 Nicotiana tabacum HOM05D000294 ORTHO05D000177 1.2e-16 90.1 120 47.5
MD05G1248500 Malus domestica HOM05D000294 ORTHO05D000177 1.5e-16 89.7 119 49.6
Dinv17499 Davidia involucrata HOM05D000294 ORTHO05D000177 2.0e-16 89.4 109 46.8
CsaV3_1G010140 Cucumis sativus L. HOM05D000294 ORTHO05D000177 2.6e-16 89.0 111 47.7
Lj1C1147T4 Lonicera japonica HOM05D000294 ORTHO05D000177 2.6e-16 89.0 111 48.6
Nitab4.5_0000443g0100 Nicotiana tabacum HOM05D000294 ORTHO05D000177 2.6e-16 89.0 109 45.9
CANSAT35G1247 Cannabis sativa HOM05D000294 ORTHO05D000177 3.4e-16 88.6 115 49.6
Ciclev10016385m.g Citrus clementina HOM05D000294 ORTHO05D000177 3.4e-16 88.6 109 47.7
Lalb_Chr20g0114241 Lupinus albus HOM05D000294 ORTHO05D000177 4.5e-16 88.2 116 50.0
CiPaw.10G062600 Carya illinoinensis HOM05D000294 ORTHO05D000177 9.9e-16 87.0 122 48.4
Sed0020569 Sechium edule HOM05D000294 ORTHO05D000177 1.7e-15 86.3 119 47.9
Sopen02g017650 Solanum pennellii HOM05D000294 ORTHO05D000177 1.7e-15 86.3 120 45.8
MD10G1229000 Malus domestica HOM05D000294 ORTHO05D000177 2.9e-15 85.5 109 46.8
CAN.G2053.1 Capsicum annuum HOM05D000294 ORTHO05D000177 6.4e-15 84.3 117 44.4
Cfa000668 Carpinus fangiana HOM05D000294 ORTHO05D000177 8.4e-15 84.0 113 49.6
Haze_06151 Corylus avellana HOM05D000294 ORTHO05D000177 8.4e-15 84.0 113 49.6
Peaxi162Scf00199g00612 Petunia axillaris HOM05D000294 ORTHO05D000177 8.4e-15 84.0 111 45.9
Rhsim13G0129000 Rhododendron simsii HOM05D000294 ORTHO05D000177 1.1e-14 83.6 115 46.1
Solyc02g068510.2 Solanum lycopersicum HOM05D000294 ORTHO05D000177 1.4e-14 83.2 120 45.0
Actinidia22424 Actinidia chinensis HOM05D000294 ORTHO05D000177 3.2e-14 82.0 113 47.8
Nn7g38277 Nelumbo nucifera HOM05D000294 ORTHO05D000177 3.2e-14 82.0 108 47.2
Atru.chr10.415 Acer truncatum HOM05D000294 ORTHO05D000177 5.4e-14 81.3 105 48.6
CSS0005021 Camellia sinensis var. sinensis HOM05D000294 ORTHO05D000177 5.4e-14 81.3 112 47.3
Duzib052G0979 Durio zibethinus HOM05D000294 ORTHO05D000177 5.4e-14 81.3 110 46.4
COL.COLO4_17633 Corchorus olitorius HOM05D000294 ORTHO05D000177 7.1e-14 80.9 116 48.3
TWI38G2334 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 7.1e-14 80.9 110 44.5
RcHm_v2.0_Chr5g0020661 Rosa chinensis HOM05D000294 ORTHO05D000177 9.3e-14 80.5 118 44.9
Sabra03G0046100 Salix brachista HOM05D000294 ORTHO05D000177 9.3e-14 80.5 109 45.0
Manes.16G052100 Manihot esculenta HOM05D000294 ORTHO05D000177 1.2e-13 80.1 117 45.3
FvH4_3g12690 Fragaria vesca HOM05D000294 ORTHO05D000177 1.6e-13 79.7 118 43.2
FAN25G0397 Fragaria x ananassa HOM05D000294 ORTHO05D000177 1.6e-13 79.7 118 43.2
Potri.003G075600 Populus trichocarpa HOM05D000294 ORTHO05D000177 2.1e-13 79.3 109 44.0
TAR627G0988 Trochodendron aralioides HOM05D000294 ORTHO05D000177 2.1e-13 79.3 111 43.2
FAN21G4012 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.7e-13 79.0 117 43.6
Thecc.02G005800 Theobroma cacao HOM05D000294 ORTHO05D000177 2.7e-13 79.0 109 45.0
Medtr4g094680 Medicago truncatula HOM05D000294 ORTHO05D000177 4.6e-13 78.2 112 47.3
Lj2A343G73 Lonicera japonica HOM05D000294 ORTHO05D000177 6.0e-13 77.8 111 42.3
MBI18_g44048_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 1.0e-12 77.0 109 42.2
TPR.G17967 Trifolium pratense HOM05D000294 ORTHO05D000177 1.0e-12 77.0 112 50.0
Cpa.g.sc30.133 Carica papaya HOM05D000294 ORTHO05D000177 1.3e-12 76.6 111 50.5
arahy.Tifrunner.gnm1.ann1.47BD5H Arachis hypogaea HOM05D000294 ORTHO05D000177 2.3e-12 75.9 114 52.6
FAN16G2025 Fragaria x ananassa HOM05D000294 ORTHO05D000177 2.3e-12 75.9 118 42.4
arahy.Tifrunner.gnm1.ann1.L85JRJ Arachis hypogaea HOM05D000294 ORTHO05D000177 3.0e-12 75.5 111 55.0
Cc09_g05570 Coffea canephora HOM05D000294 ORTHO05D000177 3.9e-12 75.1 111 44.1
Duzib132G0190 Durio zibethinus HOM05D000294 ORTHO05D000177 5.1e-12 74.7 113 43.4
Lsat_1_v5_gn_2_61160 Lactuca sativa HOM05D000294 ORTHO05D000177 5.1e-12 74.7 109 45.0
GSVIVG01012125001 Vitis vinifera HOM05D000294 ORTHO05D000177 5.1e-12 74.7 110 42.7
Eucgr.E04309 Eucalyptus grandis HOM05D000294 ORTHO05D000177 1.9e-11 72.8 106 48.1
Migut.M01999 Erythranthe guttata HOM05D000294 ORTHO05D000177 2.5e-11 72.4 110 41.8
Potri.001G159200 Populus trichocarpa HOM05D000294 ORTHO05D000177 4.3e-11 71.6 109 41.3
Sabra01G0132700 Salix brachista HOM05D000294 ORTHO05D000177 5.6e-11 71.2 109 40.4
TWI15G0108 Tripterygium wilfordii HOM05D000294 ORTHO05D000177 5.6e-11 71.2 109 46.8
ECA238G2136 Erigeron canadensis HOM05D000294 ORTHO05D000177 1.6e-10 69.7 109 38.5
PSO675G4387 Papaver somniferum HOM05D000294 ORTHO05D000177 1.6e-10 69.7 114 43.0
Manes.03G075532 Manihot esculenta HOM05D000294 ORTHO05D000177 3.6e-10 68.6 112 43.8
PSO541G0894 Papaver somniferum HOM05D000294 ORTHO05D000177 3.6e-10 68.6 118 43.2
THA.LOC104798561 Tarenaya hassleriana HOM05D000294 ORTHO05D000177 3.6e-10 68.6 110 41.8
Psat7g088520 Pisum sativum HOM05D000294 ORTHO05D000177 4.8e-10 68.2 111 50.5
Manes.03G075500 Manihot esculenta HOM05D000294 ORTHO05D000177 6.2e-10 67.8 111 42.3
CDE05G2082 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 1.4e-09 66.6 118 42.4
MSTRG.7602 Avicennia marina HOM05D000294 ORTHO05D000177 1.8e-09 66.2 111 42.3
CDE11G0571 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 1.8e-09 66.2 118 42.4
MELO3C002404.2 Cucumis melo HOM05D000294 ORTHO05D000177 3.1e-09 65.5 52 61.5
HanXRQChr14g0440151 Helianthus annuus HOM05D000294 ORTHO05D000177 3.1e-09 65.5 109 39.4
Oeu056053.1 Olea europaea HOM05D000294 ORTHO05D000177 5.3e-09 64.7 116 42.2
CDE06G2754 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 6.9e-09 64.3 120 39.2
MBI18_g08631_MAGBIO Magnolia biondii HOM05D000294 ORTHO05D000177 1.2e-08 63.5 51 60.8
Sc17g0004180 Simmondsia chinensis HOM05D000294 ORTHO05D000177 3.4e-08 62.0 117 39.3
Sp1g26890 Schrenkiella parvula HOM05D000294 ORTHO05D000177 4.5e-08 61.6 108 48.1
Sed0000531 Sechium edule HOM05D000294 ORTHO05D000177 4.5e-08 61.6 111 43.2
PGR004G1349 Punica granatum HOM05D000294 ORTHO05D000177 7.6e-08 60.8 63 49.2
HPP92_005954 Vanilla planifolia HOM05D000294 ORTHO05D000177 7.6e-08 60.8 110 38.2
Thhalv10009789m.g Eutrema salsugineum HOM05D000294 ORTHO05D000177 2.9e-07 58.9 109 36.7
Carub.0001s2942 Capsella rubella HOM05D000294 ORTHO05D000177 3.8e-07 58.5 106 47.2
SalBow8G1110 Salvia bowleyana HOM05D000294 ORTHO05D000177 4.9e-07 58.2 109 37.6
AL1G45440 Arabidopsis lyrata HOM05D000294 ORTHO05D000177 6.4e-07 57.8 106 48.1
AT1G31040 Arabidopsis thaliana HOM05D000294 ORTHO05D000177 6.4e-07 57.8 106 48.1
CDE02G1926 Ceratophyllum demersum HOM05D000294 ORTHO05D000177 1.1e-06 57.0 40 65.0
BraA09t39047Z Brassica rapa HOM05D000294 ORTHO05D000177 1.4e-06 56.6 108 50.0
MSTRG.16364 Avicennia marina HOM05D000294 ORTHO05D000177 2.4e-06 55.8 109 38.5
A07p09540 Brassica napus HOM05D000294 ORTHO05D000177 4.2e-06 55.1 108 49.1
BraA07t28748Z Brassica rapa HOM05D000294 ORTHO05D000177 4.2e-06 55.1 108 49.1
SGA_v2.0_scaffold175G39351 Striga asiatica HOM05D000294 ORTHO05D000177 4.2e-06 55.1 109 36.7
A08p10830 Brassica napus HOM05D000294 ORTHO05D000177 5.5e-06 54.7 106 36.8
BraA08t33079Z Brassica rapa HOM05D000294 ORTHO05D000177 5.5e-06 54.7 106 36.8


User provided reference genes

Program Settings