Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 1.6e-146 522.7 256 100.0
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 3.0e-105 385.6 228 86.0
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 2.8e-103 379.0 256 76.2
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 6.3e-95 351.3 231 80.1
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.1e-91 340.5 221 76.5
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 6.8e-89 331.3 229 73.4
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 2.0e-88 329.7 227 76.7
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.9e-87 325.1 225 75.1
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 6.3e-87 324.7 234 73.5
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 2.4e-86 322.8 227 74.9
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 2.1e-82 309.7 259 62.9
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 2.0e-80 303.1 227 66.1
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 2.2e-79 299.7 225 65.8
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 5.4e-78 295.0 230 65.7
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 7.0e-78 294.7 218 71.6
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 4.6e-77 292.0 227 66.1
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.0e-76 290.8 226 64.6
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.3e-76 290.4 225 65.3
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 3.9e-76 288.9 227 64.8
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 3.9e-76 288.9 221 66.1
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 5.0e-76 288.5 227 63.9
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 3.3e-75 285.8 225 65.8
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.2e-74 283.9 226 63.7
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 1.6e-74 283.5 234 62.4
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 2.1e-74 283.1 234 65.4
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 2.1e-74 283.1 230 63.0
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 6.2e-74 281.6 226 62.8
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.8e-73 280.0 228 64.0
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 3.1e-73 279.3 187 71.7
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.5e-72 276.9 225 61.8
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.6e-72 276.2 235 62.6
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 3.4e-72 275.8 247 59.1
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 5.8e-72 275.0 178 72.5
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 1.7e-71 273.5 168 76.2
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.7e-71 273.5 220 63.2
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 1.7e-71 273.5 235 58.3
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 2.2e-71 273.1 232 61.6
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 4.9e-71 271.9 231 60.2
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 6.4e-71 271.6 226 62.8
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 8.3e-71 271.2 182 71.4
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 1.4e-70 270.4 198 66.2
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 2.4e-70 269.6 232 60.3
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 3.2e-70 269.2 206 69.4
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 3.2e-70 269.2 171 73.1
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 7.0e-70 268.1 201 67.7
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 7.0e-70 268.1 233 59.7
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 1.2e-69 267.3 167 74.3
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 1.6e-69 266.9 233 57.1
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.1e-69 266.5 182 69.2
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 2.7e-69 266.2 209 66.0
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.5e-69 265.8 182 68.1
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.6e-69 265.4 244 57.0
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 4.6e-69 265.4 179 70.9
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 6.0e-69 265.0 212 62.7
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.0e-68 264.2 178 67.4
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.0e-68 264.2 171 71.9
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.0e-68 264.2 171 71.9
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.0e-68 264.2 225 61.3
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 3.0e-68 262.7 187 64.7
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 3.9e-68 262.3 176 69.3
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 5.1e-68 261.9 171 72.5
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 1.1e-67 260.8 229 60.3
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 9.5e-67 257.7 160 75.0
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 2.1e-66 256.5 223 61.0
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.1e-66 256.5 215 61.4
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.8e-66 256.1 166 74.1
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 3.6e-66 255.8 185 68.1
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 3.6e-66 255.8 185 68.1
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 3.6e-66 255.8 189 66.1
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 3.6e-66 255.8 189 65.1
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 1.4e-65 253.8 228 57.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.8e-65 253.4 155 75.5
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 3.1e-65 252.7 198 64.6
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 6.8e-65 251.5 185 67.0
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 6.8e-65 251.5 169 71.6
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 8.9e-65 251.1 175 68.0
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 1.2e-64 250.8 226 59.3
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 1.2e-64 250.8 184 65.8
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.5e-64 250.4 234 56.0
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 3.4e-64 249.2 171 71.3
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 4.4e-64 248.8 172 70.3
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 5.8e-64 248.4 167 68.9
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 5.8e-64 248.4 159 71.7
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 9.9e-64 247.7 172 70.9
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.3e-63 247.3 166 72.9
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.3e-63 247.3 226 57.1
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.7e-63 246.9 172 69.8
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.9e-62 243.4 226 55.3
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 7.1e-62 241.5 229 59.4
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.0e-60 237.7 198 60.6
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 3.0e-60 236.1 203 62.6
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 5.1e-60 235.3 228 56.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.1e-60 235.3 179 63.1
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.1e-59 234.2 156 73.1
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 2.5e-59 233.0 145 75.2
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 1.6e-58 230.3 125 83.2
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 2.8e-58 229.6 165 65.5
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.8e-58 229.6 204 60.3
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 2.6e-56 223.0 147 70.7
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 2.2e-55 219.9 196 57.7
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 7.8e-53 211.5 169 60.9
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 8.7e-52 208.0 139 72.7
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.9e-51 206.8 179 62.0
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 9.0e-49 198.0 212 50.9
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 6.4e-47 191.8 154 54.5
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 3.2e-46 189.5 180 56.1
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 9.0e-41 171.4 111 64.9
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 2.0e-40 170.2 221 47.1
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.8e-36 157.1 155 52.9
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.8e-36 157.1 155 52.9
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 3.9e-36 156.0 93 76.3
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.6e-34 150.6 93 76.3
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 1.4e-33 147.5 136 50.7
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 7.6e-32 141.7 131 48.9
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 9.9e-32 141.4 128 47.7
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 9.9e-32 141.4 82 80.5
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.3e-26 124.4 137 54.0
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 2.1e-26 123.6 136 51.5
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 3.7e-26 122.9 91 63.7
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 2.2e-23 113.6 140 50.7
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 7.1e-22 108.6 90 57.8
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.8e-18 96.7 127 34.6
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 5.1e-12 75.9 38 92.1
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 1.2e-08 64.7 164 27.4
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 4.2e-06 56.2 36 66.7


User provided reference genes

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