Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 5.2e-168 594.3 311 100.0
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 1.0e-99 367.5 708 40.1
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 1.4e-91 340.5 721 37.4
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 2.3e-83 313.2 297 64.6
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 6.3e-81 305.1 729 36.1
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 1.0e-75 287.7 642 36.6
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 7.7e-71 271.6 712 32.9
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 8.6e-70 268.1 712 32.4
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 1.9e-69 266.9 717 33.3
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 2.5e-69 266.5 302 57.0
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 2.5e-69 266.5 709 33.4
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 5.5e-69 265.4 336 53.3
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.0e-67 261.2 720 32.4
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 6.8e-67 258.5 336 51.5
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 1.2e-66 257.7 302 56.3
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 2.8e-65 253.1 727 31.5
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 1.1e-64 251.1 728 31.5
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 9.2e-64 248.1 728 31.3
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 2.7e-63 246.5 726 30.7
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.5e-63 246.1 727 30.9
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 4.6e-63 245.7 303 53.1
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 1.0e-62 244.6 727 31.2
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 1.5e-61 240.7 715 31.5
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 1.5e-61 240.7 340 49.4
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 5.0e-54 215.7 235 55.7
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.8e-51 207.2 298 46.6
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 8.9e-51 204.9 300 46.0
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 2.6e-50 203.4 238 52.1
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 5.8e-50 202.2 301 45.8
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 7.5e-50 201.8 301 45.5
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 2.2e-49 200.3 303 44.9
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 2.9e-49 199.9 301 45.2
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 3.7e-49 199.5 301 45.2
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 6.4e-49 198.7 301 44.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 1.1e-48 198.0 303 45.2
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 1.1e-48 198.0 298 44.0
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.4e-48 197.6 301 44.2
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.9e-48 197.2 301 46.2
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.9e-48 197.2 301 46.8
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 1.9e-48 197.2 303 45.2
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 2.4e-48 196.8 301 43.9
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 3.2e-48 196.4 301 46.2
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 4.1e-48 196.1 300 44.7
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 5.4e-48 195.7 299 45.2
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.5e-47 193.0 299 42.8
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 3.5e-47 193.0 300 45.0
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 4.6e-47 192.6 300 44.3
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 6.0e-47 192.2 301 45.2
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 7.8e-47 191.8 298 44.0
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.0e-46 191.4 301 45.2
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 1.0e-46 191.4 301 42.9
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.7e-46 190.7 301 44.5
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.7e-46 190.7 300 43.0
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.7e-46 190.7 299 42.5
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.3e-46 190.3 299 42.1
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 2.3e-46 190.3 301 42.5
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 5.1e-46 189.1 300 44.0
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 6.6e-46 188.7 300 43.7
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 8.6e-46 188.3 299 42.1
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 8.6e-46 188.3 300 43.7
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.5e-45 187.6 299 42.5
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 2.5e-45 186.8 300 42.0
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 2.5e-45 186.8 301 43.2
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 3.3e-45 186.4 303 44.2
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 4.3e-45 186.0 292 42.8
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 4.3e-45 186.0 299 41.8
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 7.3e-45 185.3 301 41.9
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 7.3e-45 185.3 300 43.3
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 9.5e-45 184.9 302 41.7
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 9.5e-45 184.9 299 41.8
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 2.1e-44 183.7 301 43.2
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 2.8e-44 183.3 297 40.1
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 3.6e-44 183.0 299 41.1
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 3.6e-44 183.0 299 41.1
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 3.6e-44 183.0 299 41.1
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.6e-44 183.0 302 42.7
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 4.7e-44 182.6 295 40.3
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 4.7e-44 182.6 300 41.3
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 8.1e-44 181.8 299 40.5
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.1e-43 181.4 299 40.5
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 1.1e-43 181.4 299 40.5
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.1e-43 181.4 301 41.5
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 1.4e-43 181.0 299 39.8
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 1.4e-43 181.0 301 41.2
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 1.4e-43 181.0 301 41.2
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 1.4e-43 181.0 300 43.0
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 1.8e-43 180.6 299 39.8
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 2.3e-43 180.3 300 42.7
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 2.3e-43 180.3 302 41.7
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 4.0e-43 179.5 297 43.1
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 4.0e-43 179.5 299 39.8
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 4.0e-43 179.5 301 40.5
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 5.2e-43 179.1 292 40.4
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 1.2e-42 177.9 292 40.1
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 1.2e-42 177.9 292 40.1
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 1.5e-42 177.6 305 40.3
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 2.0e-42 177.2 268 43.7
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 2.6e-42 176.8 292 39.7
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 3.4e-42 176.4 296 43.6
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 4.4e-42 176.0 292 39.7
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 4.4e-42 176.0 299 41.5
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 4.4e-42 176.0 301 40.9
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 9.9e-42 174.9 297 39.4
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 1.3e-41 174.5 299 40.1
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 1.3e-41 174.5 303 42.6
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.7e-41 174.1 300 40.0
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.7e-41 174.1 303 42.6
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.9e-41 173.3 295 40.7
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 3.7e-41 172.9 299 39.5
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 8.3e-41 171.8 300 39.3
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 1.9e-40 170.6 299 41.5
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 1.9e-40 170.6 300 41.0
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 3.2e-40 169.9 299 40.8
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 5.4e-40 169.1 294 40.8
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 1.6e-39 167.5 300 39.7
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 1.6e-39 167.5 293 41.3
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 3.5e-39 166.4 300 41.0
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 4.6e-39 166.0 107 81.3
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 1.0e-38 164.9 308 39.9
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.0e-38 164.9 300 40.3
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 3.0e-38 163.3 298 40.3
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 1.1e-37 161.4 300 39.7
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 1.1e-37 161.4 221 50.7
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 9.6e-37 158.3 297 38.7
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 8.1e-36 155.2 298 38.6
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.4e-35 153.7 298 37.6
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 6.8e-35 152.1 300 39.3
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 6.8e-35 152.1 302 35.1
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 8.9e-35 151.8 301 38.9
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.5e-34 151.0 287 36.9
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 2.0e-34 150.6 301 36.2
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 4.4e-34 149.4 299 36.5
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 1.3e-33 147.9 277 37.9
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 1.4e-32 144.4 281 37.7
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.4e-32 143.7 165 51.5
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 5.4e-32 142.5 300 35.3
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 5.4e-32 142.5 298 37.2
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 2.7e-31 140.2 292 36.3
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 4.3e-29 132.9 303 35.6
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 8.1e-28 128.6 154 51.3
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 7.6e-26 122.1 278 35.6
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 3.8e-25 119.8 283 35.7
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.3e-20 104.8 304 31.2
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 7.6e-18 95.5 89 67.4
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.4e-16 91.3 87 50.6
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 1.6e-15 87.8 169 38.5
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.7e-15 87.0 303 28.1
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 6.0e-15 85.9 325 25.8
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 7.9e-15 85.5 217 30.4
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 7.9e-15 85.5 83 49.4
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 3.0e-14 83.6 68 72.1
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 3.7e-12 76.6 46 78.3
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 5.3e-11 72.8 335 24.2
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.7e-09 67.8 85 42.4
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.2e-08 63.5 283 24.4
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 5.1e-06 56.2 160 31.2


User provided reference genes

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