Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 2.4e-62 242.3 147 100.0
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 4.1e-38 161.8 155 61.3
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 5.3e-38 161.4 148 55.4
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 7.7e-37 157.5 148 66.2
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 4.8e-31 138.3 95 62.1
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 1.0e-25 120.6 70 77.1
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 6.8e-25 117.9 70 71.4
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 2.8e-23 112.5 77 63.6
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 3.7e-23 112.1 77 68.8
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 6.3e-23 111.3 77 64.9
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 4.0e-17 92.0 96 44.8
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 8.9e-17 90.9 60 60.0
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 8.9e-17 90.9 58 63.8
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 3.4e-16 89.0 67 56.7
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 5.7e-16 88.2 57 57.9
Lj5g0000209 Lotus japonicus HOM05D007757 ORTHO05D009619 7.5e-16 87.8 60 66.7
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.3e-15 87.0 56 62.5
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 2.2e-15 86.3 56 60.7
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 2.2e-15 86.3 56 60.7
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 2.2e-15 86.3 72 54.2
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 3.7e-15 85.5 58 60.3
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 3.7e-15 85.5 67 53.7
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 6.3e-15 84.7 58 60.3
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 7.0e-14 81.3 54 59.3
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 7.0e-14 81.3 52 63.5
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 9.2e-14 80.9 62 53.2
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 9.2e-14 80.9 73 49.3
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 2.7e-13 79.3 56 57.1
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 3.5e-13 79.0 50 64.0
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.5e-13 78.6 52 57.7
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 5.9e-13 78.2 81 42.0
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 5.9e-13 78.2 81 42.0
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 5.9e-13 78.2 81 42.0
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 7.8e-13 77.8 44 70.5
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 7.8e-13 77.8 56 57.1
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 1.0e-12 77.4 48 64.6
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 1.3e-12 77.0 61 52.5
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.3e-12 77.0 61 52.5
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 2.3e-12 76.3 76 43.4
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 2.3e-12 76.3 52 55.8
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.9e-12 75.9 61 59.0
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 5.0e-12 75.1 76 42.1
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 8.6e-12 74.3 52 57.7
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 8.6e-12 74.3 52 57.7
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 8.6e-12 74.3 52 57.7
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.1e-11 73.9 81 38.3
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 1.9e-11 73.2 47 61.7
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 2.5e-11 72.8 47 61.7
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 4.3e-11 72.0 52 55.8
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 4.3e-11 72.0 52 55.8
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 9.5e-11 70.9 62 58.1
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 9.5e-11 70.9 62 58.1
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 9.5e-11 70.9 62 58.1
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.2e-10 70.5 50 66.0
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-10 69.7 52 53.8
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 4.7e-10 68.6 50 58.0
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 4.7e-10 68.6 52 51.9
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 4.7e-10 68.6 42 59.5
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 6.1e-10 68.2 62 56.5
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 6.1e-10 68.2 91 36.3
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 6.1e-10 68.2 91 36.3
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 8.0e-10 67.8 47 55.3
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 8.0e-10 67.8 42 57.1
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 8.0e-10 67.8 85 37.6
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 2.3e-09 66.2 54 59.3
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 3.1e-09 65.9 53 54.7
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 8.9e-09 64.3 42 54.8
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 1.2e-08 63.9 68 47.1
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 1.5e-08 63.5 50 48.0
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 2.6e-08 62.8 50 50.0
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 4.4e-08 62.0 43 55.8
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 5.8e-08 61.6 60 43.3
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 7.5e-08 61.2 42 54.8
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.7e-07 60.1 42 54.8
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 1.7e-07 60.1 52 46.2
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 6.4e-07 58.2 50 54.0
AUR62035218 Chenopodium quinoa HOM05D007757 ORTHO05D009619 8.3e-07 57.8 68 44.1
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 5.4e-06 55.1 48 43.8
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 5.4e-06 55.1 48 43.8
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 5.4e-06 55.1 48 43.8
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 5.4e-06 55.1 48 43.8
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 5.4e-06 55.1 48 43.8
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 5.4e-06 55.1 48 43.8


User provided reference genes

Program Settings