Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15005 Trifolium pratense HOM05D000470 ORTHO05D411708 2.4e-37 159.1 114 100.0
TPR.G21200 Trifolium pratense HOM05D000470 ORTHO05D000348 4.2e-18 95.1 50 94.0
TPR.G2851 Trifolium pratense HOM05D000470 ORTHO05D000348 1.2e-17 93.6 51 90.2
Medtr1g076210 Medicago truncatula HOM05D000470 ORTHO05D000348 6.7e-16 87.8 51 86.3
Medtr1g093280 Medicago truncatula HOM05D000470 ORTHO05D000348 6.7e-16 87.8 51 86.3
Psat6g139360 Pisum sativum HOM05D000470 ORTHO05D000348 2.6e-15 85.9 51 84.3
Ca_09873_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 3.3e-15 85.5 51 80.4
Ca_27084_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 1.3e-14 83.6 51 80.4
VMungo0720G2562 Vigna mungo HOM05D000470 ORTHO05D000348 2.4e-13 79.3 51 78.4
VMungo0720G2319 Vigna mungo HOM05D000470 ORTHO05D000348 5.3e-13 78.2 51 76.5
Lalb_Chr06g0169021 Lupinus albus HOM05D000470 ORTHO05D000348 7.0e-13 77.8 51 74.5
Lj5g0007360 Lotus japonicus HOM05D000470 ORTHO05D000348 9.1e-13 77.4 51 72.5
Phvul.007G084900 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 1.2e-12 77.0 51 74.5
Glyma.20G210300 Glycine max HOM05D000470 ORTHO05D000348 1.6e-12 76.6 52 76.9
Potri.008G161400 Populus trichocarpa HOM05D000470 ORTHO05D000348 4.5e-12 75.1 51 74.5
Glyma.10G180200 Glycine max HOM05D000470 ORTHO05D000348 1.0e-11 73.9 51 70.6
Sabra08G0123200 Salix brachista HOM05D000470 ORTHO05D000348 1.7e-11 73.2 51 72.5
arahy.Tifrunner.gnm1.ann1.WBNY1K Arachis hypogaea HOM05D000470 ORTHO05D000348 1.9e-10 69.7 51 66.7
QL06p015266 Quercus lobata HOM05D000470 ORTHO05D000348 3.2e-10 68.9 51 68.6
Haze_24053 Corylus avellana HOM05D000470 ORTHO05D000348 4.2e-10 68.6 66 57.6
Cfa011467 Carpinus fangiana HOM05D000470 ORTHO05D000348 7.2e-10 67.8 51 64.7
CsaV3_2G013190 Cucumis sativus L. HOM05D000470 ORTHO05D000348 7.2e-10 67.8 52 69.2
Potri.010G077900 Populus trichocarpa HOM05D000470 ORTHO05D000348 7.2e-10 67.8 51 64.7
arahy.Tifrunner.gnm1.ann1.2ZN6A3 Arachis hypogaea HOM05D000470 ORTHO05D000348 9.4e-10 67.4 51 64.7
Sabra10G0065200 Salix brachista HOM05D000470 ORTHO05D000348 9.4e-10 67.4 51 64.7
TAR362G1177 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.2e-09 67.0 51 62.7
THA.LOC104819320 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 4.7e-09 65.1 51 62.7
GSVIVG01018104001 Vitis vinifera HOM05D000470 ORTHO05D000348 4.7e-09 65.1 51 64.7
FvH4_4g02330 Fragaria vesca HOM05D000470 ORTHO05D000348 8.0e-09 64.3 51 62.7
FAN12G1303 Fragaria x ananassa HOM05D000470 ORTHO05D000348 8.0e-09 64.3 51 62.7
FAN17G2099 Fragaria x ananassa HOM05D000470 ORTHO05D000348 8.0e-09 64.3 51 62.7
FAN22G2335 Fragaria x ananassa HOM05D000470 ORTHO05D000348 8.0e-09 64.3 51 62.7
CANSAT78G1971 Cannabis sativa HOM05D000470 ORTHO05D000348 1.0e-08 63.9 51 60.8
CiPaw.02G117000 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.4e-08 63.5 51 68.6
Manes.03G169600 Manihot esculenta HOM05D000470 ORTHO05D000348 1.4e-08 63.5 51 64.7
PSO017G7262 Papaver somniferum HOM05D000470 ORTHO05D000348 1.4e-08 63.5 51 58.8
PSO170G5112 Papaver somniferum HOM05D000470 ORTHO05D000348 1.4e-08 63.5 51 58.8
Cfa008392 Carpinus fangiana HOM05D000470 ORTHO05D000348 2.3e-08 62.8 51 64.7
CiPaw.01G192100 Carya illinoinensis HOM05D000470 ORTHO05D000348 2.3e-08 62.8 49 65.3
ClCG06G006640 Citrullus lanatus HOM05D000470 ORTHO05D000348 2.3e-08 62.8 52 69.2
COL.COLO4_15776 Corchorus olitorius HOM05D000470 ORTHO05D000348 4.0e-08 62.0 51 58.8
Ciclev10005128m.g Citrus clementina HOM05D000470 ORTHO05D000348 5.2e-08 61.6 51 62.7
DCAR_024207 Daucus carota HOM05D000470 ORTHO05D000348 5.2e-08 61.6 51 60.8
RcHm_v2.0_Chr4g0389661 Rosa chinensis HOM05D000470 ORTHO05D000348 5.2e-08 61.6 51 56.9
Duzib052G0230 Durio zibethinus HOM05D000470 ORTHO05D000348 6.7e-08 61.2 52 59.6
Prupe.1G027800 Prunus persica HOM05D000470 ORTHO05D000348 6.7e-08 61.2 51 58.8
Manes.15G036400 Manihot esculenta HOM05D000470 ORTHO05D000348 1.2e-07 60.5 51 58.8
CSS0010923 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 1.5e-07 60.1 51 58.8
Dinv14081 Davidia involucrata HOM05D000470 ORTHO05D000348 1.5e-07 60.1 51 62.7
Gorai.011G170800 Gossypium raimondii HOM05D000470 ORTHO05D000348 1.5e-07 60.1 51 60.8
MD16G1207000 Malus domestica HOM05D000470 ORTHO05D000348 1.5e-07 60.1 51 56.9
Rhsim04G0193400 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.5e-07 60.1 51 58.8
Thecc.04G245100 Theobroma cacao HOM05D000470 ORTHO05D000348 1.5e-07 60.1 51 58.8
Actinidia04487 Actinidia chinensis HOM05D000470 ORTHO05D000348 2.0e-07 59.7 51 58.8
CSS0009510 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 2.0e-07 59.7 51 60.8
CSS0039269 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 2.0e-07 59.7 51 60.8
Gohir.A10G123900 Gossypium hirsutum HOM05D000470 ORTHO05D000348 2.0e-07 59.7 51 60.8
Gohir.D10G152400 Gossypium hirsutum HOM05D000470 ORTHO05D000348 2.0e-07 59.7 51 60.8
MD13G1205200 Malus domestica HOM05D000470 ORTHO05D000348 2.0e-07 59.7 51 56.9
Sed0027938 Sechium edule HOM05D000470 ORTHO05D000348 2.0e-07 59.7 52 65.4
vmacro08405 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 2.6e-07 59.3 51 56.9
CSS0008811 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 3.3e-07 58.9 51 62.7
Manes.15G036500 Manihot esculenta HOM05D000470 ORTHO05D000348 3.3e-07 58.9 51 60.8
THA.LOC104799566 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 3.3e-07 58.9 51 58.8
Duzib151G0945 Durio zibethinus HOM05D000470 ORTHO05D000348 4.4e-07 58.5 51 54.9
Thhalv10004289m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 4.4e-07 58.5 51 58.8
MBI04_g33204_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 7.5e-07 57.8 50 52.0
Lalb_Chr02g0150071 Lupinus albus HOM05D000470 ORTHO05D000348 9.7e-07 57.4 49 61.2
Actinidia24944 Actinidia chinensis HOM05D000470 ORTHO05D000348 1.3e-06 57.0 54 50.0
TAR636G0368 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.3e-06 57.0 51 56.9
GSVIVG01000745001 Vitis vinifera HOM05D000470 ORTHO05D000348 1.3e-06 57.0 54 55.6
Atru.chr4.2267 Acer truncatum HOM05D000470 ORTHO05D000348 1.7e-06 56.6 51 54.9
Cpa.g.sc14.77 Carica papaya HOM05D000470 ORTHO05D000348 1.7e-06 56.6 50 62.0
Haze_11277 Corylus avellana HOM05D000470 ORTHO05D000348 1.7e-06 56.6 51 64.7
Sp2g27630 Schrenkiella parvula HOM05D000470 ORTHO05D000348 1.7e-06 56.6 51 54.9
Aqoxy6G02409 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 2.2e-06 56.2 51 54.9
BcaB04g19974 Brassica carinata HOM05D000470 ORTHO05D000348 2.2e-06 56.2 51 52.9
A09p08710 Brassica napus HOM05D000470 ORTHO05D000348 2.2e-06 56.2 51 52.9
BolC9t53892H Brassica oleracea HOM05D000470 ORTHO05D000348 2.2e-06 56.2 51 52.9
BraA09t36519Z Brassica rapa HOM05D000470 ORTHO05D000348 2.2e-06 56.2 51 52.9
MELO3C026764.2 Cucumis melo HOM05D000470 ORTHO05D000348 2.2e-06 56.2 40 70.0
Dinv22472 Davidia involucrata HOM05D000470 ORTHO05D000348 2.2e-06 56.2 54 50.0
Sed0024346 Sechium edule HOM05D000470 ORTHO05D000348 2.2e-06 56.2 51 62.7
Phvul.003G138304 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 2.8e-06 55.8 51 60.8
BcaC01g06911 Brassica carinata HOM05D000470 ORTHO05D000348 3.7e-06 55.5 51 51.0
BcaC04g23311 Brassica carinata HOM05D000470 ORTHO05D000348 3.7e-06 55.5 51 52.9
C03p61680 Brassica napus HOM05D000470 ORTHO05D000348 3.7e-06 55.5 51 51.0
C09p09840 Brassica napus HOM05D000470 ORTHO05D000348 3.7e-06 55.5 51 52.9
Hund24919 Selenicereus undatus HOM05D000470 ORTHO05D000348 3.7e-06 55.5 51 62.7
AL8G41950 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 4.8e-06 55.1 50 54.0
A06p31290 Brassica napus HOM05D000470 ORTHO05D000348 4.8e-06 55.1 51 51.0
BraA06t26068Z Brassica rapa HOM05D000470 ORTHO05D000348 4.8e-06 55.1 51 51.0
CSS0039513 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 6.3e-06 54.7 47 57.4
Zm00001eb056820 Zea mays HOM05D000470 ORTHO05D000348 6.3e-06 54.7 51 58.8


User provided reference genes

Program Settings