Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14997 Trifolium pratense HOM05D002925 ORTHO05D003247 4.4e-217 757.7 388 100.0
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 2.4e-202 708.8 388 93.6
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 2.0e-169 599.4 398 79.9
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 1.2e-158 563.5 398 75.6
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 3.0e-112 409.5 421 57.5
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 1.1e-111 407.5 416 56.0
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 5.2e-109 398.7 283 76.0
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 1.2e-100 370.9 418 52.6
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 9.9e-100 367.9 410 54.4
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 6.4e-99 365.2 414 52.9
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 1.2e-81 307.8 408 49.3
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 2.5e-79 300.1 408 48.5
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 9.3e-74 281.6 427 42.2
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 3.0e-72 276.6 429 42.2
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 3.2e-66 256.5 430 40.5
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 1.4e-64 251.1 283 53.0
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 1.1e-63 248.1 423 37.8
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 2.9e-51 206.8 422 34.6
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 4.2e-50 203.0 413 33.7
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 1.6e-49 201.1 411 36.5
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 1.8e-48 197.6 417 35.0
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 6.3e-46 189.1 411 36.3
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.4e-45 188.0 413 36.1
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.2e-44 184.9 420 34.8
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.0e-44 184.1 411 35.5
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.3e-43 181.4 418 34.4
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.9e-42 177.6 440 33.4
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.5e-42 177.2 413 34.6
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 5.5e-42 176.0 413 34.4
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 6.1e-41 172.6 433 30.9
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 1.4e-40 171.4 407 33.2
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 4.4e-39 166.4 163 59.5
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 6.3e-38 162.5 418 32.3
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 1.6e-36 157.9 419 32.7
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 1.6e-36 157.9 409 32.8
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 6.5e-35 152.5 420 30.7
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 1.9e-34 151.0 416 31.2
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 4.2e-34 149.8 416 30.5
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 7.2e-34 149.1 414 31.4
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 6.8e-32 142.5 408 32.4
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.5e-31 141.4 460 28.9
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.0e-28 131.0 423 28.6
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 7.7e-28 129.0 411 30.7
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 7.7e-28 129.0 312 33.0
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 1.3e-27 128.3 380 31.3
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 3.6e-25 120.2 396 28.8
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.5e-23 114.8 203 38.9
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 1.8e-21 107.8 382 28.3
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 5.4e-21 106.3 141 41.8
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 4.6e-20 103.2 425 30.1
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 7.8e-20 102.4 386 29.3
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 5.0e-19 99.8 390 28.2
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.9e-18 97.8 106 50.0
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.9e-18 97.8 423 28.6
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 4.3e-18 96.7 299 29.8
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 5.6e-18 96.3 392 28.8
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 9.5e-18 95.5 465 25.8
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.2e-17 95.1 466 25.8
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 1.6e-17 94.7 476 25.6
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.8e-17 94.0 476 25.2
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 3.6e-17 93.6 468 24.6
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 4.7e-17 93.2 374 28.1
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 6.1e-17 92.8 421 24.9
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 6.1e-17 92.8 158 37.3
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 8.0e-17 92.4 418 25.4
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.3e-16 90.9 405 24.0
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 8.9e-16 89.0 459 25.3
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.2e-15 88.6 159 38.4
RcHm_v2.0_Chr6g0271781 Rosa chinensis HOM05D002925 ORTHO05D003247 1.5e-15 88.2 99 42.4
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 4.4e-15 86.7 398 26.1
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 1.4e-13 81.6 410 28.3
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 1.4e-13 81.6 410 28.3
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 7.0e-13 79.3 199 29.1
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 2.0e-12 77.8 200 30.0
ATR0782G041 Amborella trichopoda HOM05D002925 ORTHO05D003247 2.0e-12 77.8 47 72.3
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 2.7e-12 77.4 155 36.1
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 3.5e-12 77.0 112 42.0
CSS0008363 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 6.0e-12 76.3 123 41.5
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.0e-11 75.5 297 28.6
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.3e-11 75.1 187 31.0
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.7e-11 74.7 187 31.0
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 1.1e-10 72.0 194 30.9
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.1e-10 72.0 218 27.5
Actinidia00276 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.5e-10 71.6 108 41.7
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.5e-10 71.6 149 34.9
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 4.3e-10 70.1 166 34.9
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 9.5e-10 68.9 188 30.3
CAN.G193.33 Capsicum annuum HOM05D002925 ORTHO05D000105 1.4e-08 65.1 187 32.1
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 1.4e-08 65.1 164 34.8
PSO210G0747 Papaver somniferum HOM05D002925 ORTHO05D003247 3.1e-08 63.9 92 39.1
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 3.1e-08 63.9 109 36.7
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 5.2e-08 63.2 109 36.7
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.8e-08 62.8 156 31.4
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.8e-08 62.8 191 27.7
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 1.2e-07 62.0 233 25.8
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.2e-07 62.0 254 27.6
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.5e-07 61.6 153 29.4
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 4.4e-07 60.1 103 34.0
Dinv09024 Davidia involucrata HOM05D002925 ORTHO05D003247 1.3e-06 58.5 58 53.4
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 1.3e-06 58.5 216 26.9
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 2.2e-06 57.8 55 41.8
Os09g0473300 Oryza sativa ssp. japonica HOM05D036816 ORTHO05D003247 2.2e-06 57.8 47 44.7
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 4.9e-06 56.6 190 29.5
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 8.3e-06 55.8 42 52.4


User provided reference genes

Program Settings