Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 1.6e-68 262.7 136 100.0
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.4e-40 169.9 143 68.5
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 3.2e-29 132.1 179 49.2
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 1.6e-28 129.8 183 48.1
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 2.1e-28 129.4 175 49.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 6.7e-27 124.4 171 45.6
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 8.7e-27 124.0 175 47.4
Ca_09865_v3 Cicer arietinum L. HOM05D007526 ORTHO05D009350 8.2e-25 117.5 123 56.1
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 4.1e-24 115.2 163 46.0
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 4.5e-23 111.7 190 42.1
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 2.9e-22 109.0 194 41.8
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 5.0e-22 108.2 184 39.1
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 2.5e-21 105.9 204 38.7
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 2.5e-21 105.9 230 36.1
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 7.2e-21 104.4 144 45.8
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 4.6e-20 101.7 107 52.3
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 3.0e-19 99.0 181 39.2
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 6.7e-19 97.8 189 39.2
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 8.8e-19 97.4 189 37.6
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 8.8e-19 97.4 189 37.6
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 2.8e-17 92.4 171 39.2
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 4.8e-17 91.7 154 44.2
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 4.8e-17 91.7 155 45.8
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 6.3e-17 91.3 160 44.4
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.8e-16 89.7 160 44.4
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.4e-16 89.4 160 44.4
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 2.4e-16 89.4 230 32.6
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 1.2e-15 87.0 174 35.1
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 2.0e-15 86.3 114 44.7
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 2.6e-15 85.9 184 37.5
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.6e-15 85.9 180 35.6
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 3.4e-15 85.5 184 37.5
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 5.9e-15 84.7 59 67.8
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 7.7e-15 84.3 172 38.4
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 7.7e-15 84.3 187 35.3
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 7.7e-15 84.3 157 41.4
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.0e-14 84.0 198 34.3
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 1.3e-14 83.6 196 34.2
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 2.2e-14 82.8 145 42.1
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 2.9e-14 82.4 114 43.0
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 1.1e-13 80.5 113 46.9
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 1.9e-13 79.7 191 34.6
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.9e-13 79.7 194 30.9
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 2.5e-13 79.3 194 36.6
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 5.5e-13 78.2 196 34.7
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.6e-12 76.6 193 33.2
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 3.6e-12 75.5 194 34.5
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 6.1e-12 74.7 64 57.8
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 6.1e-12 74.7 73 50.7
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 6.1e-12 74.7 64 56.2
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 7.9e-12 74.3 57 63.2
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 7.9e-12 74.3 126 39.7
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 7.9e-12 74.3 64 54.7
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.8e-11 73.2 73 50.7
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 1.8e-11 73.2 97 46.4
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 3.9e-11 72.0 65 53.8
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 3.9e-11 72.0 65 53.8
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 3.9e-11 72.0 65 53.8
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 6.7e-11 71.2 64 54.7
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 6.7e-11 71.2 109 41.3
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 8.8e-11 70.9 64 54.7
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 8.8e-11 70.9 57 59.6
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 8.8e-11 70.9 65 52.3
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 8.8e-11 70.9 65 52.3
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.1e-10 70.5 69 47.8
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 2.0e-10 69.7 80 43.8
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 2.0e-10 69.7 59 55.9
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.0e-10 69.7 59 55.9
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.6e-10 69.3 57 57.9
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 2.6e-10 69.3 127 37.8
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.6e-10 69.3 57 57.9
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 4.4e-10 68.6 155 31.6
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 5.7e-10 68.2 57 59.6
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 2.2e-09 66.2 176 32.4
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 3.7e-09 65.5 201 31.8
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 8.2e-09 64.3 57 52.6
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 1.8e-08 63.2 70 50.0
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 2.4e-08 62.8 53 54.7
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 2.4e-08 62.8 177 33.9
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 4.1e-08 62.0 159 32.1
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 2.6e-07 59.3 64 43.8
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 3.4e-07 58.9 188 31.4
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 7.7e-07 57.8 83 43.4
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 1.0e-06 57.4 50 52.0
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 1.7e-06 56.6 174 29.3
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 3.8e-06 55.5 49 55.1
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 6.5e-06 54.7 188 29.3
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 6.5e-06 54.7 86 43.0
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 8.5e-06 54.3 149 31.5


User provided reference genes

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