Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-244 849.0 426 100.0
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.0e-235 818.1 423 96.7
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.0e-235 818.1 423 97.2
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 9.2e-232 806.6 423 95.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 9.8e-226 786.6 423 92.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.1e-221 773.1 416 93.5
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.3e-221 771.5 410 93.7
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 5.6e-221 770.8 415 92.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 4.7e-220 767.7 424 91.7
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.1e-219 766.5 405 93.8
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 3.4e-218 761.5 402 94.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.4e-216 755.4 405 93.1
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 4.1e-216 754.6 405 92.8
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 9.2e-216 753.4 425 89.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 9.5e-213 743.4 419 88.1
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.6e-212 741.5 405 91.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 4.7e-212 741.1 405 91.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 6.2e-212 740.7 424 88.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.1e-211 740.0 405 91.1
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.8e-211 739.2 405 91.9
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 3.1e-211 738.4 424 87.3
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.1e-211 738.4 421 87.4
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.2e-211 737.6 421 87.2
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 8.9e-211 736.9 405 90.6
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 8.9e-211 736.9 405 90.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 8.9e-211 736.9 405 90.6
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 8.9e-211 736.9 405 90.6
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.2e-210 736.5 405 90.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.2e-210 736.5 405 90.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.2e-210 736.5 405 90.6
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.2e-210 736.5 417 88.2
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.2e-210 736.5 405 90.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.0e-210 735.7 405 90.4
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 2.6e-210 735.3 424 87.3
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 3.4e-210 734.9 405 91.1
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 3.4e-210 734.9 425 87.1
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.4e-210 734.6 421 86.9
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 5.8e-210 734.2 405 90.1
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.8e-210 734.2 405 90.9
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 7.5e-210 733.8 405 90.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 7.5e-210 733.8 405 89.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 9.9e-210 733.4 405 89.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.3e-209 733.0 405 90.6
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.9e-209 731.9 411 88.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 4.9e-209 731.1 415 87.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 6.4e-209 730.7 415 87.7
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 8.3e-209 730.3 415 88.2
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.4e-208 729.6 405 89.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.4e-208 729.6 415 87.7
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 3.2e-208 728.4 419 86.6
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 4.1e-208 728.0 405 89.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 9.2e-208 726.9 423 85.6
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 9.2e-208 726.9 404 89.1
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 9.2e-208 726.9 424 86.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.2e-207 726.5 405 89.9
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.6e-207 726.1 405 88.1
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 3.5e-207 724.9 425 85.4
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 3.5e-207 724.9 405 89.6
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.0e-207 724.2 419 86.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 6.0e-207 724.2 405 88.9
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.0e-206 723.4 424 85.4
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.0e-206 723.4 405 88.9
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.3e-206 723.0 405 88.4
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 3.9e-206 721.5 405 88.4
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 5.1e-206 721.1 424 85.4
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 5.1e-206 721.1 405 87.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.1e-205 719.9 416 86.5
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.9e-205 719.2 405 88.1
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 7.3e-205 717.2 405 87.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.3e-205 717.2 410 88.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.5e-205 716.8 405 87.4
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.2e-204 716.5 423 85.3
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.2e-204 716.5 405 87.2
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.6e-204 716.1 453 81.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 2.1e-204 715.7 404 88.9
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.7e-204 714.5 404 88.1
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.2e-204 714.1 420 85.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 6.2e-204 714.1 424 85.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.1e-203 711.8 418 85.4
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 6.8e-203 710.7 400 88.2
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.2e-202 709.9 411 85.9
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.5e-202 709.5 404 87.9
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 7.6e-202 707.2 431 83.3
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.9e-200 702.6 417 84.2
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 4.1e-200 701.4 399 87.2
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.4e-200 701.0 421 83.8
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 7.1e-200 700.7 405 85.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.1e-200 700.7 423 84.2
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 9.2e-200 700.3 424 84.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.0e-199 697.6 405 85.2
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 3.0e-198 695.3 405 84.9
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.1e-198 694.5 405 84.7
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 8.7e-198 693.7 380 90.3
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.6e-197 691.0 434 81.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.1e-196 689.1 434 81.8
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.8e-196 688.7 423 80.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 9.0e-195 683.7 405 84.2
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.6e-194 682.2 405 83.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.9e-193 678.7 420 81.9
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 4.9e-193 677.9 422 82.7
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 6.2e-188 661.0 404 83.2
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.3e-185 653.3 405 80.7
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.1e-184 647.5 405 76.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.1e-183 646.0 417 75.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.6e-183 644.8 423 75.7
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.3e-182 643.3 417 75.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.4e-176 622.5 381 82.2
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.7e-175 619.0 343 88.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.9e-174 615.1 424 77.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.5e-170 603.2 406 72.7
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.5e-168 594.7 354 84.2
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-167 593.6 420 68.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 6.3e-164 581.3 417 71.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.1e-163 580.5 318 89.9
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 6.1e-159 564.7 405 69.1
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.7e-158 561.2 405 72.3
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.5e-157 560.1 397 67.5
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 6.3e-156 554.7 302 89.1
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.4e-155 552.7 302 88.7
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.4e-155 552.7 337 84.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.8e-150 534.3 310 87.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.8e-148 528.5 391 71.6
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.6e-143 512.3 405 68.1
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 8.5e-137 491.1 271 87.8
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.5e-130 468.8 314 71.3
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.9e-129 466.1 405 65.2
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 6.8e-126 454.9 413 57.4
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 6.3e-124 448.4 407 57.5
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-123 447.2 407 57.2
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.1e-123 446.0 406 57.1
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-118 430.3 405 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 7.0e-115 418.3 278 72.7
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 4.0e-110 402.5 427 48.7
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-101 372.9 404 49.8
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 5.8e-93 345.5 458 40.8
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.3e-92 344.4 447 49.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-86 323.9 404 47.0
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.4e-78 297.0 342 43.9
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.0e-70 269.6 152 89.5
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.2e-59 233.0 256 49.6
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.3e-56 223.0 261 50.2
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.2e-53 214.9 397 37.8
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 7.4e-48 195.7 142 69.7
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 5.5e-43 179.5 96 95.8
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 7.9e-42 175.6 115 80.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 4.8e-39 166.4 100 89.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 8.2e-39 165.6 105 81.9
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.3e-31 139.4 74 91.9
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.2e-27 126.7 76 85.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.3e-23 115.2 66 77.3
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.3e-23 112.8 71 78.9
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 2.0e-21 107.8 88 63.6
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.2e-20 104.4 54 98.1
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 4.2e-19 100.1 80 66.2
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.5e-16 89.4 50 86.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 2.4e-14 84.3 52 80.8
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.0e-12 79.0 50 74.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-12 78.6 49 77.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.9e-12 77.4 77 55.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 8.0e-10 69.3 43 76.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.4e-06 57.8 52 55.8


User provided reference genes

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