Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 7.3e-191 670.6 395 100.0
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 1.1e-106 391.0 510 56.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 4.0e-104 382.5 510 55.7
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.5e-98 364.0 417 62.1
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 3.3e-90 336.3 497 49.9
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.2e-70 270.4 401 45.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 9.2e-69 265.0 417 51.8
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.0e-60 235.7 419 41.8
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 6.6e-59 232.3 453 39.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 4.4e-55 219.5 475 38.5
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 7.6e-55 218.8 493 35.3
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 8.4e-54 215.3 464 44.2
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 5.4e-53 212.6 475 39.6
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 5.4e-53 212.6 466 44.6
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 6.6e-51 205.7 547 32.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 3.8e-46 189.9 428 45.6
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 5.8e-39 166.0 403 32.8
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 3.2e-37 160.2 407 33.2
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 4.2e-37 159.8 386 32.6
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 5.4e-37 159.5 429 33.1
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 9.3e-37 158.7 427 32.6
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 2.1e-36 157.5 450 36.9
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 2.1e-36 157.5 397 33.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.0e-35 155.2 388 30.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.3e-35 154.8 437 35.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 3.0e-35 153.7 486 29.2
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.9e-34 151.0 389 33.7
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 5.6e-34 149.4 388 32.5
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 5.6e-34 149.4 394 30.2
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 7.4e-34 149.1 496 28.2
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 9.6e-34 148.7 395 30.6
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 2.8e-33 147.1 434 29.0
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.8e-33 147.1 495 33.1
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 4.8e-33 146.4 480 28.1
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.8e-33 146.4 456 31.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 6.2e-33 146.0 463 30.7
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 8.1e-33 145.6 427 30.2
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.4e-32 144.8 419 31.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.8e-32 144.4 384 31.5
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.8e-32 144.4 384 31.5
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.1e-32 143.7 466 27.9
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.1e-32 143.7 210 43.8
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 6.9e-32 142.5 450 31.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 9.0e-32 142.1 387 31.5
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.0e-32 142.1 511 26.8
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.5e-31 141.4 395 31.1
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-31 141.0 424 30.2
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 3.4e-31 140.2 434 37.6
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 3.4e-31 140.2 408 30.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 5.8e-31 139.4 423 30.5
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.8e-31 139.4 419 32.5
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 7.6e-31 139.0 403 31.0
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 7.6e-31 139.0 439 30.5
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.6e-31 139.0 412 29.1
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.3e-30 138.3 395 31.1
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.3e-30 138.3 434 29.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-30 138.3 496 27.4
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.7e-30 137.9 501 32.7
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.2e-30 137.5 397 28.7
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-30 137.1 218 43.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.9e-30 137.1 383 31.3
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.9e-30 137.1 426 34.5
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 8.4e-30 135.6 422 28.0
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 8.4e-30 135.6 434 28.3
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-29 135.2 461 28.9
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.1e-29 135.2 461 29.9
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.1e-29 135.2 395 33.4
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 2.5e-29 134.0 418 29.9
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 3.2e-29 133.7 469 27.7
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 4.2e-29 133.3 466 29.6
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 5.5e-29 132.9 409 31.5
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 7.1e-29 132.5 398 30.2
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 9.3e-29 132.1 125 52.0
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.2e-28 131.7 469 27.7
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 2.1e-28 131.0 422 31.8
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 2.1e-28 131.0 422 31.8
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 2.7e-28 130.6 218 39.0
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 3.5e-28 130.2 457 28.9
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 6.0e-28 129.4 434 35.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 7.9e-28 129.0 469 27.9
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 7.9e-28 129.0 450 26.9
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 7.9e-28 129.0 420 31.0
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.0e-27 128.6 432 32.4
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 1.3e-27 128.3 386 28.5
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.0e-27 127.1 455 33.4
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.0e-27 127.1 455 33.4
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.0e-27 127.1 405 29.4
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.0e-27 127.1 414 33.3
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.9e-27 126.7 455 28.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 3.9e-27 126.7 434 35.7
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 3.9e-27 126.7 478 30.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.5e-26 124.8 415 28.9
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.5e-26 124.8 398 26.9
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.5e-26 124.8 447 28.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.9e-26 124.4 215 37.7
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.5e-26 124.0 208 38.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 2.5e-26 124.0 558 25.3
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.5e-26 124.0 396 28.3
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.3e-25 121.7 498 29.3
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 4.8e-25 119.8 201 39.8
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 8.2e-25 119.0 201 40.3
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 3.1e-24 117.1 210 37.1
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 4.0e-24 116.7 432 27.3
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 5.3e-24 116.3 471 26.5
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.2e-23 115.2 448 27.5
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.2e-23 115.2 201 39.8
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 2.0e-23 114.4 104 51.0
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.0e-23 114.4 396 28.5
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.6e-23 114.0 104 52.9
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.4e-23 113.6 435 27.4
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.4e-23 113.6 463 32.2
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.5e-23 113.2 545 25.0
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.5e-23 113.2 125 47.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.0e-22 112.1 449 26.7
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.3e-22 111.7 390 27.9
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 2.2e-22 110.9 473 35.1
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.9e-22 110.5 101 51.5
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.9e-22 110.5 212 35.8
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.4e-21 108.2 132 47.0
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.9e-21 107.8 99 54.5
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.9e-21 107.8 213 34.7
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 4.2e-21 106.7 490 23.9
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.2e-20 105.1 216 38.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.2e-20 105.1 391 28.1
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.6e-20 104.8 130 41.5
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 6.1e-20 102.8 462 29.9
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.9e-19 100.1 209 34.0
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 5.7e-18 96.3 108 44.4
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.7e-17 93.6 111 41.4
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.8e-17 93.2 422 32.0
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 6.9e-16 89.4 412 26.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 9.0e-16 89.0 98 44.9
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.7e-14 84.7 406 25.9
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.9e-13 81.3 104 41.3
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 3.2e-13 80.5 104 41.3
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 7.9e-12 75.9 60 55.0
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.0e-11 73.9 55 61.8
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 3.3e-10 70.5 50 60.0
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.3e-09 68.6 103 37.9
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 4.8e-09 66.6 91 36.3
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.3e-08 63.2 111 34.2
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 6.9e-08 62.8 99 35.4
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 5.9e-07 59.7 99 32.3
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 1.7e-06 58.2 44 59.1
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.8e-06 57.0 40 65.0
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.0e-06 56.6 76 40.8
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 5.0e-06 56.6 97 30.9
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 8.5e-06 55.8 52 44.2


User provided reference genes

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