Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.0e-200 702.2 342 100.0
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-143 511.9 344 75.0
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.7e-141 505.8 284 87.0
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.0e-140 503.8 316 79.1
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 7.1e-134 481.1 292 80.1
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.6e-133 479.9 377 68.7
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.6e-132 474.2 364 68.1
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 9.6e-131 470.7 297 77.4
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 9.6e-131 470.7 284 79.6
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.5e-128 463.4 370 67.8
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.9e-126 456.4 323 74.3
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 6.6e-124 448.0 266 77.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.6e-122 442.2 278 75.9
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.1e-121 440.7 262 77.5
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.8e-121 439.9 288 75.0
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.8e-121 439.9 308 68.5
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.8e-121 439.9 266 78.2
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.4e-121 439.5 294 71.8
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 3.1e-121 439.1 308 68.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.3e-121 438.3 308 67.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 6.9e-121 438.0 295 71.2
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.0e-120 436.4 313 68.4
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.6e-120 436.0 320 67.8
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 9.9e-120 434.1 296 72.3
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 9.9e-120 434.1 329 66.9
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.3e-119 433.7 329 66.9
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.7e-119 433.3 307 67.8
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.2e-119 433.0 309 66.7
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.8e-119 432.2 323 65.3
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.1e-118 430.6 270 74.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.4e-118 430.3 287 70.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.4e-118 429.5 309 68.6
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 3.2e-118 429.1 313 68.1
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.4e-118 428.3 320 66.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.6e-117 426.8 266 74.8
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 2.1e-117 426.4 305 67.5
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 2.7e-117 426.0 320 66.6
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 4.6e-117 425.2 332 63.6
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.6e-117 425.2 266 74.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.6e-117 425.2 285 72.6
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 7.9e-117 424.5 339 63.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.0e-116 422.5 298 66.8
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.0e-116 422.5 317 67.2
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.9e-116 422.2 280 68.9
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 5.1e-116 421.8 305 68.5
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 8.7e-116 421.0 258 74.8
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.5e-115 420.2 305 67.5
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 3.3e-115 419.1 319 65.5
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 4.3e-115 418.7 291 69.1
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.3e-115 418.7 265 73.2
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 5.6e-115 418.3 262 74.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.8e-114 416.0 312 66.0
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 3.7e-114 415.6 334 62.0
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 4.8e-114 415.2 311 65.6
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.1e-113 414.1 314 64.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.1e-113 412.5 332 63.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.0e-113 412.1 345 60.0
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.3e-113 411.8 341 59.8
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 5.3e-113 411.8 272 71.7
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 3.4e-112 409.1 287 67.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.8e-112 408.3 292 68.8
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.2e-111 406.4 301 65.8
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.4e-111 404.8 288 65.6
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.9e-110 403.3 316 62.3
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.4e-110 402.9 289 66.4
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 2.4e-110 402.9 287 66.2
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 4.2e-110 402.1 315 64.4
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.2e-110 402.1 315 64.4
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 5.5e-110 401.7 296 65.5
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.3e-110 401.0 346 60.7
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.6e-109 400.2 269 68.0
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 3.5e-109 399.1 345 60.6
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.6e-109 398.7 335 61.2
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 4.6e-109 398.7 263 70.0
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-108 397.1 297 66.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.8e-108 396.7 294 66.7
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.3e-108 396.4 258 71.7
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 3.0e-108 396.0 312 66.3
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 8.7e-108 394.4 296 65.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-107 393.3 310 62.3
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.9e-107 393.3 279 67.0
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 5.6e-107 391.7 295 66.8
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 9.6e-107 391.0 270 68.5
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.6e-106 390.2 303 64.4
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.1e-106 389.8 326 58.3
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.1e-106 389.8 311 62.4
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.8e-106 389.4 297 63.3
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.8e-106 389.4 329 58.4
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.1e-105 387.5 318 60.7
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.1e-105 387.5 266 68.4
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.2e-104 384.0 266 68.4
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.6e-104 382.9 289 64.7
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.8e-103 379.0 305 60.0
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.9e-103 378.6 262 66.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 4.2e-102 375.6 269 65.1
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 7.9e-101 371.3 244 73.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 3.9e-100 369.0 298 63.1
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.5e-99 367.1 297 60.6
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.9e-99 366.7 338 56.5
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 7.4e-99 364.8 324 59.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.6e-98 363.6 309 58.6
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.8e-97 360.1 226 73.0
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.8e-97 360.1 298 60.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 4.1e-97 359.0 227 72.7
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 9.0e-97 357.8 350 54.9
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.2e-96 357.5 258 63.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.6e-96 356.3 298 59.4
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.4e-96 355.9 258 66.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.9e-94 350.1 311 57.9
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.5e-94 349.7 291 58.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.7e-93 346.3 334 56.9
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 4.6e-93 345.5 303 58.1
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.0e-92 344.4 273 60.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.9e-89 331.6 325 52.6
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 6.9e-89 331.6 324 54.9
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.6e-88 329.7 268 60.8
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.6e-88 329.7 371 49.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.0e-87 327.8 328 53.4
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.9e-87 326.2 334 53.9
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 8.5e-87 324.7 265 55.8
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 4.2e-86 322.4 334 53.6
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 9.4e-86 321.2 262 57.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.0e-84 317.8 342 51.5
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.8e-84 317.0 280 55.7
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.2e-80 304.3 245 60.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.1e-78 297.7 261 56.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 3.0e-76 289.7 343 46.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 3.9e-76 289.3 196 68.9
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.7e-74 282.7 331 48.9
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 3.7e-74 282.7 261 52.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-73 281.2 332 48.8
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-72 277.7 252 55.2
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.7e-71 273.9 302 50.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 6.7e-68 261.9 260 48.5
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.6e-67 260.0 275 48.7
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.7e-67 258.1 282 47.5
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.6e-64 250.8 330 44.2
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 3.2e-62 243.0 160 70.6
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 3.2e-62 243.0 169 67.5
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-61 241.1 326 41.7
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.6e-61 239.6 182 65.9
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.7e-61 239.2 182 65.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 4.7e-61 239.2 191 61.8
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.4e-60 237.7 146 74.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 5.2e-60 235.7 200 60.5
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 3.4e-59 233.0 171 64.3
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.7e-58 230.7 160 68.8
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.8e-57 227.3 171 63.7
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 3.1e-57 226.5 184 61.4
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.1e-57 226.5 182 62.1
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.3e-55 220.3 482 32.0
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-54 218.0 227 50.7
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 5.5e-54 215.7 168 63.7
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 9.5e-54 214.9 259 41.7
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 2.6e-51 206.8 291 40.2
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.1e-46 191.4 345 33.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 8.0e-45 185.3 117 70.1
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 7.5e-43 178.7 134 62.7
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-42 177.6 119 67.2
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 4.9e-42 176.0 178 54.5
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.7e-40 170.2 118 66.1
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.0e-40 169.1 104 74.0
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 4.3e-38 162.9 106 68.9
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.0e-35 154.1 127 57.5
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 3.4e-35 153.3 104 66.3
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.6e-32 144.4 82 79.3
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 8.6e-31 138.7 186 43.0
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.8e-28 131.0 138 51.4
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.2e-25 120.2 127 48.8
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.2e-25 118.6 127 48.0
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.7e-24 117.1 90 60.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.1e-20 103.6 81 60.5
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.4e-19 99.8 72 59.7
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.2e-18 97.4 64 64.1
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 5.4e-17 92.8 60 71.7
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.5e-14 84.7 50 76.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.5e-11 74.7 67 56.7
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.3e-10 71.6 55 61.8
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.9e-09 67.8 53 60.4
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 9.3e-09 65.5 37 81.1


User provided reference genes

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