Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.4e-53 212.6 101 100.0
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.6e-52 208.4 101 98.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 4.6e-49 197.6 101 92.1
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.1e-47 193.0 101 91.1
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.5e-44 182.6 100 83.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 7.6e-44 180.3 92 90.2
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-43 179.1 95 88.4
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-43 179.1 95 88.4
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-43 179.1 95 88.4
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.7e-43 179.1 100 82.0
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.2e-43 178.7 98 84.7
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 5.5e-42 174.1 100 80.0
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.6e-41 172.6 94 81.9
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 3.9e-40 167.9 98 79.6
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 7.4e-39 163.7 94 80.9
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 7.4e-39 163.7 94 80.9
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 4.8e-38 161.0 98 74.5
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 5.3e-37 157.5 96 76.0
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 6.9e-37 157.1 96 77.1
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 9.0e-37 156.8 96 75.0
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.5e-36 156.0 98 74.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.0e-36 155.6 96 76.0
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.0e-36 155.6 98 73.5
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 2.6e-36 155.2 93 76.3
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.6e-36 155.2 86 81.4
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.5e-36 154.5 96 76.0
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.5e-36 154.5 91 80.2
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.9e-36 154.1 96 75.0
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 5.9e-36 154.1 98 71.4
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.9e-36 154.1 99 72.7
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.0e-35 153.3 79 84.8
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.0e-35 153.3 79 87.3
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.0e-35 153.3 79 87.3
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.3e-35 152.9 99 71.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.7e-35 152.5 91 78.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 93 75.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.7e-35 152.5 95 74.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.2e-35 152.1 98 73.5
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.2e-35 152.1 96 75.0
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.2e-35 152.1 83 79.5
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.9e-35 151.8 96 71.9
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.8e-35 151.4 95 73.7
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 5.0e-35 151.0 94 73.4
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 5.0e-35 151.0 96 72.9
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.0e-35 151.0 87 80.5
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 5.0e-35 151.0 87 80.5
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.0e-35 151.0 87 80.5
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 6.5e-35 150.6 82 80.5
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 6.5e-35 150.6 94 73.4
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 8.4e-35 150.2 92 76.1
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.4e-34 149.4 98 71.4
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.9e-34 149.1 82 76.8
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.9e-34 149.1 92 75.0
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.5e-34 148.7 82 79.3
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 4.2e-34 147.9 86 77.9
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 4.2e-34 147.9 80 81.2
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 5.5e-34 147.5 101 69.3
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 9.3e-34 146.7 83 75.9
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 9.3e-34 146.7 82 79.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.6e-33 146.0 95 70.5
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.6e-33 146.0 86 76.7
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.1e-33 145.6 81 76.5
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.1e-33 145.6 95 69.5
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.7e-33 145.2 79 81.0
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.7e-33 145.2 79 81.0
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 3.5e-33 144.8 91 74.7
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 4.6e-33 144.4 82 73.2
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 7.9e-33 143.7 99 68.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.0e-32 143.3 95 70.5
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 1.0e-32 143.3 82 73.2
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.0e-32 143.3 82 76.8
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.0e-32 143.3 87 74.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.0e-32 143.3 101 66.3
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.3e-32 142.9 79 79.7
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.3e-32 142.9 82 75.6
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.3e-32 142.9 91 71.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.8e-32 142.5 91 70.3
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.8e-32 142.5 79 79.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.8e-32 142.5 97 69.1
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.8e-32 142.5 100 67.0
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.8e-32 142.5 78 76.9
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.3e-32 142.1 66 95.5
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.0e-32 141.7 79 79.7
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.0e-32 141.7 79 79.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.0e-32 141.7 79 79.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 3.9e-32 141.4 98 67.3
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 3.9e-32 141.4 98 67.3
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 3.9e-32 141.4 98 67.3
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 3.9e-32 141.4 98 67.3
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 8.7e-32 140.2 96 71.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.1e-31 139.8 105 64.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 3.3e-31 138.3 122 59.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 4.3e-31 137.9 91 69.2
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.7e-31 137.5 79 75.9
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.6e-30 136.0 76 78.9
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.2e-30 135.6 86 76.7
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 3.7e-30 134.8 80 72.5
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.8e-30 134.4 82 75.6
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 3.1e-29 131.7 77 74.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.1e-29 131.3 79 72.2
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.1e-29 131.3 79 72.2
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 4.1e-29 131.3 83 68.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 5.3e-29 131.0 76 76.3
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 9.0e-29 130.2 75 74.7
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-28 129.0 66 86.4
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.7e-27 125.9 68 83.8
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.2e-27 125.6 104 57.7
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 2.9e-27 125.2 63 84.1
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.5e-26 122.1 86 62.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.6e-25 119.4 65 76.9
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.8e-24 115.9 83 60.2
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 3.9e-24 114.8 82 61.0
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.1e-24 114.4 72 70.8
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.3e-22 109.8 63 74.6
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.7e-22 108.2 82 64.6
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 8.2e-22 107.1 84 58.3
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 8.2e-22 107.1 91 58.2
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 3.1e-21 105.1 63 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 5.3e-21 104.4 77 59.7
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 9.1e-21 103.6 66 66.7
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.5e-20 102.8 53 79.2
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.5e-20 102.8 62 72.6
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 2.9e-19 98.6 63 68.3
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 6.5e-19 97.4 67 68.7
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.9e-18 95.9 64 65.6
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.0e-16 90.1 60 68.3
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 7.4e-15 84.0 86 48.8
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 9.7e-15 83.6 59 64.4
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.1e-13 80.1 80 48.8
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 2.4e-13 79.0 73 50.7
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.4e-13 79.0 67 58.2
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.4e-13 79.0 54 68.5
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.6e-12 76.3 33 100.0
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 5.9e-12 74.3 80 51.2
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.7e-11 72.8 49 63.3
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.8e-08 62.8 59 49.2


User provided reference genes

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