Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14805 Trifolium pratense HOM05D004444 ORTHO05D005246 7.3e-56 220.3 111 100.0
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 6.6e-41 170.6 95 94.7
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 7.4e-32 140.6 98 79.6
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 1.3e-31 139.8 94 80.9
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 2.8e-31 138.7 96 80.2
VMungo0464G0300 Vigna mungo HOM05D004444 ORTHO05D005246 1.7e-28 129.4 94 74.5
Glyma.05G000200 Glycine max HOM05D004444 ORTHO05D005246 3.8e-28 128.3 94 73.4
Phvul.004G000500 Phaseolus vulgaris HOM05D004444 ORTHO05D005246 2.4e-27 125.6 94 72.3
RcHm_v2.0_Chr4g0447291 Rosa chinensis HOM05D004444 ORTHO05D005246 1.8e-25 119.4 98 68.4
Glyma.19G000300 Glycine max HOM05D004444 ORTHO05D005246 3.3e-24 115.2 98 68.4
MD13G1000100 Malus domestica HOM05D004444 ORTHO05D005246 7.4e-24 114.0 99 65.7
MD16G1005700 Malus domestica HOM05D004444 ORTHO05D005246 7.4e-24 114.0 95 68.4
Cfa018662 Carpinus fangiana HOM05D004444 ORTHO05D005246 6.2e-23 110.9 101 61.4
CiPaw.16G000300 Carya illinoinensis HOM05D004444 ORTHO05D005246 8.2e-23 110.5 103 61.2
Sed0005704 Sechium edule HOM05D004444 ORTHO05D005246 1.1e-22 110.2 103 61.2
Haze_17392 Corylus avellana HOM05D004444 ORTHO05D005246 1.8e-22 109.4 95 64.2
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 2.4e-22 109.0 102 57.8
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.4e-22 109.0 99 63.6
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.4e-22 109.0 99 63.6
ClCG11G012850 Citrullus lanatus HOM05D004444 ORTHO05D005246 3.1e-22 108.6 103 58.3
FvH4_4g37380 Fragaria vesca HOM05D004444 ORTHO05D005246 3.1e-22 108.6 99 62.6
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.1e-22 108.6 99 62.6
CsaV3_5G029250 Cucumis sativus L. HOM05D004444 ORTHO05D005246 1.2e-21 106.7 102 56.9
CSS0046171 Camellia sinensis var. sinensis HOM05D004444 ORTHO05D005246 2.0e-21 105.9 95 64.2
Prupe.1G584800 Prunus persica HOM05D004444 ORTHO05D005246 2.6e-21 105.5 100 63.0
Lj2g0009416 Lotus japonicus HOM05D004444 ORTHO05D005246 3.4e-21 105.1 102 58.8
Sed0021880 Sechium edule HOM05D004444 ORTHO05D005246 1.0e-20 103.6 103 55.3
vmacro18720 Vaccinium macrocarpon HOM05D004444 ORTHO05D005246 1.3e-20 103.2 98 61.2
Hund09760 Selenicereus undatus HOM05D004444 ORTHO05D005246 2.2e-20 102.4 93 60.2
arahy.Tifrunner.gnm1.ann1.U9T50E Arachis hypogaea HOM05D004444 ORTHO05D005246 2.9e-20 102.1 101 61.4
arahy.Tifrunner.gnm1.ann1.8PY7V8 Arachis hypogaea HOM05D004444 ORTHO05D005246 6.5e-20 100.9 101 60.4
Nitab4.5_0003481g0120 Nicotiana tabacum HOM05D004444 ORTHO05D005246 1.1e-19 100.1 93 60.2
Nitab4.5_0005808g0020 Nicotiana tabacum HOM05D004444 ORTHO05D005246 1.1e-19 100.1 93 60.2
CANSAT78G1818 Cannabis sativa HOM05D004444 ORTHO05D005246 2.5e-19 99.0 100 58.0
Rhsim02G0256600 Rhododendron simsii HOM05D004444 ORTHO05D005246 2.5e-19 99.0 93 60.2
Peaxi162Scf00082g00116 Petunia axillaris HOM05D004444 ORTHO05D005246 4.2e-19 98.2 95 61.1
Dinv12635 Davidia involucrata HOM05D004444 ORTHO05D005246 2.7e-18 95.5 95 58.9
Sc19g0000340 Simmondsia chinensis HOM05D004444 ORTHO05D005246 3.5e-18 95.1 95 58.9
Solyc01g096500.3 Solanum lycopersicum HOM05D004444 ORTHO05D005246 3.5e-18 95.1 93 59.1
Lju50C3G3 Lonicera japonica HOM05D004444 ORTHO05D005246 4.6e-18 94.7 97 56.7
THA.LOC104818390 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 6.0e-18 94.4 96 61.5
HanXRQChr01g0023401 Helianthus annuus HOM05D004444 ORTHO05D005246 7.9e-18 94.0 97 56.7
Sopen01g040230 Solanum pennellii HOM05D004444 ORTHO05D005246 7.9e-18 94.0 93 59.1
Haze_00003 Corylus avellana HOM05D004444 ORTHO05D005246 1.0e-17 93.6 95 60.0
Gohir.A12G011300 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.3e-17 93.2 105 57.1
Gohir.D12G011700 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.3e-17 93.2 105 57.1
Gorai.008G011700 Gossypium raimondii HOM05D004444 ORTHO05D005246 1.3e-17 93.2 105 55.2
Actinidia33639 Actinidia chinensis HOM05D004444 ORTHO05D005246 1.8e-17 92.8 98 57.1
PGSC0003DMG400005402 Solanum tuberosum HOM05D004444 ORTHO05D005246 1.8e-17 92.8 93 59.1
GSVIVG01003920001 Vitis vinifera HOM05D004444 ORTHO05D005246 1.8e-17 92.8 93 59.1
CAN.G1045.17 Capsicum annuum HOM05D004444 ORTHO05D005246 2.3e-17 92.4 93 59.1
Duzib248G0301 Durio zibethinus HOM05D004444 ORTHO05D005246 3.0e-17 92.0 97 58.8
DCAR_009036 Daucus carota HOM05D004444 ORTHO05D005246 5.1e-17 91.3 93 60.2
Ciclev10014323m.g Citrus clementina HOM05D004444 ORTHO05D005246 6.7e-17 90.9 100 57.0
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 6.7e-17 90.9 93 62.4
Gohir.A04G110200 Gossypium hirsutum HOM05D004444 ORTHO05D005246 8.7e-17 90.5 105 56.2
Gohir.D04G150400 Gossypium hirsutum HOM05D004444 ORTHO05D005246 8.7e-17 90.5 97 59.8
HanXRQChr11g0343011 Helianthus annuus HOM05D004444 ORTHO05D005246 8.7e-17 90.5 97 54.6
Cc02_g29660 Coffea canephora HOM05D004444 ORTHO05D005246 1.1e-16 90.1 95 56.8
THA.LOC104800589 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 1.1e-16 90.1 101 57.4
Lsat_1_v5_gn_1_74220 Lactuca sativa HOM05D004444 ORTHO05D005246 1.5e-16 89.7 97 55.7
Thecc.02G151100 Theobroma cacao HOM05D004444 ORTHO05D005246 1.9e-16 89.4 102 60.8
EL10Ac3g05121 Beta vulgaris HOM05D004444 ORTHO05D005246 3.3e-16 88.6 91 59.3
ECA248G3474 Erigeron canadensis HOM05D004444 ORTHO05D005246 3.3e-16 88.6 97 55.7
Aa31LG11G2870 Aethionema arabicum HOM05D004444 ORTHO05D005246 4.3e-16 88.2 96 56.2
Gorai.012G137000 Gossypium raimondii HOM05D004444 ORTHO05D005246 4.3e-16 88.2 97 58.8
Atru.chr11.7 Acer truncatum HOM05D004444 ORTHO05D005246 7.4e-16 87.4 97 52.6
Duzib132G0849 Durio zibethinus HOM05D004444 ORTHO05D005246 7.4e-16 87.4 98 58.2
AT5G23450 Arabidopsis thaliana HOM05D004444 ORTHO05D005246 9.7e-16 87.0 96 57.3
Ah.04g157380 Amaranthus hybridus HOM05D004444 ORTHO05D005246 1.3e-15 86.7 87 59.8
Carub.0006s2125 Capsella rubella HOM05D004444 ORTHO05D005246 1.3e-15 86.7 96 56.2
Gorai.013G066500 Gossypium raimondii HOM05D004444 ORTHO05D005246 1.3e-15 86.7 97 58.8
Sp2g23710 Schrenkiella parvula HOM05D004444 ORTHO05D005246 1.3e-15 86.7 96 58.3
Thhalv10003687m.g Eutrema salsugineum HOM05D004444 ORTHO05D005246 1.6e-15 86.3 96 55.2
AL6G34740 Arabidopsis lyrata HOM05D004444 ORTHO05D005246 2.2e-15 85.9 96 56.2
Gohir.D13G058925 Gossypium hirsutum HOM05D004444 ORTHO05D005246 2.2e-15 85.9 92 55.4
QL01p000088 Quercus lobata HOM05D004444 ORTHO05D005246 2.2e-15 85.9 102 51.0
TAR375G0344 Trochodendron aralioides HOM05D004444 ORTHO05D005246 2.2e-15 85.9 90 58.9
Duzib052G0576 Durio zibethinus HOM05D004444 ORTHO05D005246 2.8e-15 85.5 102 57.8
PSO063G7312 Papaver somniferum HOM05D004444 ORTHO05D005246 2.8e-15 85.5 89 59.6
PSO782G3237 Papaver somniferum HOM05D004444 ORTHO05D005246 2.8e-15 85.5 89 59.6
C02p60850 Brassica napus HOM05D004444 ORTHO05D005246 3.7e-15 85.1 89 59.6
BolC2t12137H Brassica oleracea HOM05D004444 ORTHO05D005246 3.7e-15 85.1 89 59.6
BraA02t09044Z Brassica rapa HOM05D004444 ORTHO05D005246 3.7e-15 85.1 89 58.4
DCAR_020440 Daucus carota HOM05D004444 ORTHO05D005246 3.7e-15 85.1 97 55.7
Eucgr.J00322 Eucalyptus grandis HOM05D004444 ORTHO05D005246 4.8e-15 84.7 96 50.0
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 4.8e-15 84.7 94 55.3
TAR374G0400 Trochodendron aralioides HOM05D004444 ORTHO05D005246 4.8e-15 84.7 90 58.9
CARHR190060 Cardamine hirsuta HOM05D004444 ORTHO05D005246 8.2e-15 84.0 96 55.2
Nn3g18734 Nelumbo nucifera HOM05D004444 ORTHO05D005246 8.2e-15 84.0 88 55.7
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 1.1e-14 83.6 96 53.1
Oeu006789.1 Olea europaea HOM05D004444 ORTHO05D005246 1.4e-14 83.2 93 53.8
PGR044G0398 Punica granatum HOM05D004444 ORTHO05D005246 2.4e-14 82.4 96 54.2
SGA_v2.0_scaffold232G43497 Striga asiatica HOM05D004444 ORTHO05D005246 3.1e-14 82.0 98 52.0
Aqoxy5G04401 Aquilegia oxysepala HOM05D004444 ORTHO05D005246 4.1e-14 81.6 89 56.2
MBI04_g37105_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 4.1e-14 81.6 89 57.3
Hund21081 Selenicereus undatus HOM05D004444 ORTHO05D005246 1.2e-13 80.1 96 52.1
A02p40960 Brassica napus HOM05D004444 ORTHO05D005246 1.5e-13 79.7 91 57.1
MBI12_g01745_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 2.0e-13 79.3 89 51.7
Sabra10G0199000 Salix brachista HOM05D004444 ORTHO05D005246 2.0e-13 79.3 98 52.0
MSTRG.5072 Avicennia marina HOM05D004444 ORTHO05D005246 2.6e-13 79.0 94 54.3
TWI74G0409 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 4.5e-13 78.2 94 58.5
Potri.010G255600 Populus trichocarpa HOM05D004444 ORTHO05D005246 1.3e-12 76.6 98 49.0
A06p34440 Brassica napus HOM05D004444 ORTHO05D005246 2.5e-11 72.4 99 51.5
Oeu064128.1 Olea europaea HOM05D004444 ORTHO05D005246 2.5e-11 72.4 90 50.0
Potri.008G002100 Populus trichocarpa HOM05D004444 ORTHO05D005246 5.5e-11 71.2 98 48.0
Oeu013089.1 Olea europaea HOM05D004444 ORTHO05D005246 7.2e-11 70.9 90 50.0
SHI21195 Sapria himalayana HOM05D004444 ORTHO05D005246 1.6e-10 69.7 96 51.0
TWI77G0180 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 1.6e-10 69.7 93 51.6
ATR0810G148 Amborella trichopoda HOM05D004444 ORTHO05D005246 2.7e-10 68.9 73 53.4
CDE09G0893 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 3.6e-10 68.6 94 50.0
HPP92_008907 Vanilla planifolia HOM05D004444 ORTHO05D005246 3.6e-10 68.6 74 54.1
CDE11G0399 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 5.7e-08 61.2 94 47.9
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 3.7e-07 58.5 81 43.2
HPP92_022710 Vanilla planifolia HOM05D004444 ORTHO05D005246 4.1e-06 55.1 70 44.3
C07p44100 Brassica napus HOM05D004444 ORTHO05D005246 9.1e-06 53.9 99 41.4
Os04g0541500 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 9.1e-06 53.9 97 37.1
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 9.1e-06 53.9 95 42.1


User provided reference genes

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