Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14800 Trifolium pratense HOM05D003771 ORTHO05D004396 1.3e-146 523.1 266 100.0
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 9.7e-123 443.7 246 93.5
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 2.9e-119 432.2 242 92.6
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 1.6e-117 426.4 246 91.5
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 7.7e-112 407.5 246 87.0
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 1.3e-111 406.8 243 87.7
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 1.7e-111 406.4 243 87.7
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 6.5e-111 404.4 246 87.4
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 7.2e-110 401.0 243 86.8
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 5.7e-107 391.3 244 85.2
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 1.7e-106 389.8 242 85.1
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 4.9e-106 388.3 242 84.7
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 1.4e-105 386.7 253 79.4
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 9.2e-105 384.0 254 77.6
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 4.5e-104 381.7 244 82.0
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 7.8e-104 380.9 244 82.0
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 1.9e-102 376.3 252 78.2
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 1.9e-102 376.3 248 82.7
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 1.9e-102 376.3 247 81.8
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 1.2e-101 373.6 248 82.3
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 1.6e-101 373.2 250 81.6
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 2.8e-101 372.5 244 81.1
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 3.6e-101 372.1 244 81.1
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 8.0e-101 370.9 244 79.5
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.4e-100 370.2 244 80.7
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.8e-100 369.8 244 80.3
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 2.3e-100 369.4 244 80.3
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 1.5e-99 366.7 251 76.1
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 2.0e-99 366.3 248 78.2
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 2.6e-99 365.9 244 79.1
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 7.5e-99 364.4 253 77.1
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 2.2e-98 362.8 248 78.2
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 3.7e-98 362.1 250 77.2
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 6.4e-98 361.3 249 77.5
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 1.8e-97 359.8 249 77.1
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 2.4e-97 359.4 255 75.7
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 2.4e-97 359.4 255 75.7
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 9.2e-97 357.5 253 76.7
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 1.6e-96 356.7 242 77.7
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 1.6e-96 356.7 252 74.2
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 2.0e-96 356.3 249 78.3
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 2.7e-96 355.9 252 77.0
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 2.7e-96 355.9 250 76.4
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 3.5e-96 355.5 252 73.8
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 4.6e-96 355.1 255 74.5
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 1.3e-95 353.6 250 75.6
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 1.7e-95 353.2 255 74.1
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 3.9e-95 352.1 249 75.1
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 3.3e-94 349.0 257 74.3
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 4.3e-94 348.6 250 76.0
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 4.3e-94 348.6 250 76.0
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 7.3e-94 347.8 256 74.6
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 7.3e-94 347.8 249 76.3
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 9.5e-94 347.4 252 73.4
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 2.1e-93 346.3 269 68.4
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 3.6e-93 345.5 250 75.6
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 1.4e-92 343.6 252 73.0
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 6.8e-92 341.3 252 71.8
RcHm_v2.0_Chr4g0384831 Rosa chinensis HOM05D003771 ORTHO05D004396 1.2e-91 340.5 248 75.8
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 1.5e-91 340.1 257 72.8
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 2.6e-91 339.3 256 73.4
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 5.8e-91 338.2 262 68.7
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 1.3e-90 337.0 257 72.4
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 1.3e-90 337.0 248 72.2
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.7e-90 336.7 250 72.8
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 2.9e-90 335.9 255 75.7
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 6.4e-90 334.7 256 72.3
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 1.4e-89 333.6 256 71.1
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 1.4e-89 333.6 243 73.3
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 4.6e-88 328.6 255 69.4
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 7.8e-88 327.8 245 71.8
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 1.3e-87 327.0 262 67.9
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 2.3e-87 326.2 253 68.8
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 3.0e-87 325.9 245 71.4
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 3.0e-87 325.9 245 71.4
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 3.9e-87 325.5 281 66.9
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 5.0e-87 325.1 245 71.0
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 6.6e-87 324.7 245 71.4
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 6.6e-87 324.7 245 71.4
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 1.9e-86 323.2 245 71.4
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 3.3e-86 322.4 245 70.2
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 9.5e-86 320.9 245 71.0
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 9.5e-86 320.9 245 71.0
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 2.1e-85 319.7 246 70.7
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 3.6e-85 318.9 256 70.3
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 4.7e-85 318.5 244 70.9
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 8.1e-85 317.8 246 69.9
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 8.1e-85 317.8 246 69.9
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 4.0e-84 315.5 254 69.7
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 6.8e-84 314.7 242 71.9
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 2.6e-83 312.8 248 69.4
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 2.6e-83 312.8 248 69.4
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 2.6e-83 312.8 248 69.4
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 1.1e-81 307.4 257 66.9
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 1.4e-76 290.4 248 67.3
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 3.1e-76 289.3 245 64.5
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 8.9e-76 287.7 242 65.7
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 2.6e-75 286.2 245 64.1
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.3e-74 283.9 253 63.6
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 3.9e-71 272.3 166 83.7
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 1.2e-69 267.3 195 74.9
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 8.1e-69 264.6 166 84.9
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 3.0e-63 246.1 174 76.4
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 7.3e-62 241.5 278 54.7
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 3.1e-60 236.1 246 57.7
Haze_19082 Corylus avellana HOM05D003771 ORTHO05D004396 9.0e-60 234.6 178 70.8
PSO782G3302 Papaver somniferum HOM05D003771 ORTHO05D004396 3.4e-59 232.6 204 63.7
vmacro20749 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.7e-58 230.3 178 69.7
CDE07G0913 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 4.6e-56 222.2 184 65.8
MD07G1055200 Malus domestica HOM05D003771 ORTHO05D004396 8.2e-45 184.9 138 73.2
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 4.8e-37 159.1 118 64.4
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 2.4e-36 156.8 242 45.0
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 6.9e-28 128.6 75 88.0
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.2e-27 127.9 96 69.8
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 1.4e-25 120.9 273 37.7
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 3.2e-25 119.8 258 37.6
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.3e-23 113.6 78 74.4
Peaxi162Scf00322g01518 Petunia axillaris HOM05D003771 ORTHO05D004396 1.5e-22 110.9 96 60.4
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 7.4e-22 108.6 71 78.9
Oeu036957.1 Olea europaea HOM05D003771 ORTHO05D004396 1.1e-20 104.8 75 72.0
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.8e-20 104.0 130 45.4
Rhsim01G0108400 Rhododendron simsii HOM05D000041 ORTHO05D000452 4.5e-19 99.4 62 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2999 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.1e-17 94.7 181 38.7
AagrBONN_evm.TU.Sc2ySwM_369.332 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.1e-17 94.7 181 38.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 6.1e-16 89.0 80 57.5
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-06 56.6 167 30.5


User provided reference genes

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