Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14788 Trifolium pratense HOM05D000395 ORTHO05D000088 2.7e-120 435.3 211 100.0
TPR.G3547 Trifolium pratense HOM05D000395 ORTHO05D000088 4.3e-65 251.9 275 53.8
TPR.G11168 Trifolium pratense HOM05D000395 ORTHO05D000088 4.2e-60 235.3 276 51.4
Medtr6g061070 Medicago truncatula HOM05D000395 ORTHO05D000088 8.4e-53 211.1 275 47.6
TPR.G11162 Trifolium pratense HOM05D000395 ORTHO05D000088 6.7e-50 201.4 191 59.2
TPR.G35646 Trifolium pratense HOM05D000395 ORTHO05D000088 1.4e-47 193.7 188 56.4
Medtr1g035540 Medicago truncatula HOM05D000395 ORTHO05D000088 5.0e-21 105.5 67 73.1
Medtr1g035570 Medicago truncatula HOM05D000395 ORTHO05D000088 1.1e-20 104.4 157 39.5
TPR.G11177 Trifolium pratense HOM05D000395 ORTHO05D000088 2.5e-20 103.2 105 48.6
Psat6g098240 Pisum sativum HOM05D000395 ORTHO05D000088 8.0e-19 98.2 135 42.2
Medtr1g035640 Medicago truncatula HOM05D000395 ORTHO05D000088 1.4e-18 97.4 192 35.4
Lj1g0007361 Lotus japonicus HOM05D000395 ORTHO05D000088 2.3e-18 96.7 185 36.8
TPR.G14831 Trifolium pratense HOM05D000395 ORTHO05D000088 1.1e-17 94.4 116 46.6
Medtr1g050845 Medicago truncatula HOM05D000004 ORTHO05D000002 2.0e-17 93.6 147 38.1
TPR.G38419 Trifolium pratense HOM05D000395 ORTHO05D000088 2.6e-17 93.2 185 36.8
Medtr5g044670 Medicago truncatula HOM05D000395 ORTHO05D000088 1.3e-16 90.9 195 31.3
Psat6g099880 Pisum sativum HOM05D000395 ORTHO05D000088 4.8e-16 89.0 124 37.9
TPR.G34676 Trifolium pratense HOM05D000395 ORTHO05D000088 8.2e-16 88.2 135 37.8
TPR.G11172 Trifolium pratense HOM05D000395 ORTHO05D000088 1.4e-15 87.4 200 36.0
Medtr1g035490 Medicago truncatula HOM05D000395 ORTHO05D000088 2.4e-15 86.7 148 37.8
Medtr1g035620 Medicago truncatula HOM05D000395 ORTHO05D000088 4.1e-15 85.9 185 34.1
TPR.G11175 Trifolium pratense HOM05D000395 ORTHO05D000088 4.1e-15 85.9 181 32.6
Psat0s4884g0040 Pisum sativum HOM05D000395 ORTHO05D000088 9.1e-15 84.7 154 37.0
Psat0s4089g0040 Pisum sativum HOM05D000395 ORTHO05D000088 2.0e-14 83.6 113 39.8
TPR.G11163 Trifolium pratense HOM05D000395 ORTHO05D000088 2.2e-13 80.1 147 34.0
Lj2g0021298 Lotus japonicus HOM05D000395 ORTHO05D000088 2.9e-13 79.7 126 40.5
RcHm_v2.0_Chr2g0152181 Rosa chinensis HOM05D000395 ORTHO05D000088 4.2e-12 75.9 143 31.5
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.2e-12 75.1 109 35.8
FvH4_6g38700 Fragaria vesca HOM05D000395 ORTHO05D000088 9.4e-12 74.7 131 34.4
Lj2g0007049 Lotus japonicus HOM05D000395 ORTHO05D000088 1.6e-11 73.9 115 32.2
TPR.G11165 Trifolium pratense HOM05D000395 ORTHO05D000088 2.1e-11 73.6 146 31.5
Gohir.A12G067500 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.7e-11 72.4 91 40.7
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.7e-11 72.4 91 40.7
arahy.Tifrunner.gnm1.ann1.EL2WXW Arachis hypogaea HOM05D000395 ORTHO05D000088 6.1e-11 72.0 137 34.3
TPR.G11169 Trifolium pratense HOM05D000395 ORTHO05D000088 6.1e-11 72.0 84 44.0
Lj2A564T41 Lonicera japonica HOM05D000395 ORTHO05D000088 1.0e-10 71.2 152 32.2
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 1.0e-10 71.2 149 32.9
TPR.G11178 Trifolium pratense HOM05D000395 ORTHO05D000088 1.8e-10 70.5 169 28.4
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 2.3e-10 70.1 111 35.1
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 2.3e-10 70.1 139 31.7
Gohir.D12G067900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.3e-10 70.1 91 39.6
Psat0s4106g0080 Pisum sativum HOM05D000395 ORTHO05D000088 2.3e-10 70.1 156 28.8
Lalb_Chr17g0345311 Lupinus albus HOM05D000395 ORTHO05D000088 3.0e-10 69.7 172 32.0
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 6.8e-10 68.6 139 32.4
RcHm_v2.0_Chr2g0103521 Rosa chinensis HOM05D000395 ORTHO05D000088 6.8e-10 68.6 126 31.7
Medtr1g108780 Medicago truncatula HOM05D000395 ORTHO05D000088 8.8e-10 68.2 180 28.3
VMungo0720G0733 Vigna mungo HOM05D000212 ORTHO05D005509 8.8e-10 68.2 124 30.6
Lj2A565G29 Lonicera japonica HOM05D000395 ORTHO05D000088 1.2e-09 67.8 149 32.2
Glyma.20G108000 Glycine max HOM05D000395 ORTHO05D000088 2.6e-09 66.6 135 27.4
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 2.6e-09 66.6 117 35.0
Lj2g0028147 Lotus japonicus HOM05D000395 ORTHO05D000088 2.6e-09 66.6 198 25.3
Phvul.007G041900 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 2.6e-09 66.6 108 33.3
TPR.G11171 Trifolium pratense HOM05D000395 ORTHO05D000088 2.6e-09 66.6 135 31.9
FvH4_1g14660 Fragaria vesca HOM05D000395 ORTHO05D000088 3.4e-09 66.2 120 30.0
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.4e-09 66.2 123 29.3
Medtr3g098790 Medicago truncatula HOM05D000395 ORTHO05D000088 4.4e-09 65.9 134 29.9
Prupe.7G143700 Prunus persica HOM05D000395 ORTHO05D000088 5.7e-09 65.5 106 34.0
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 1.3e-08 64.3 120 28.3
FAN05G2254 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.3e-08 64.3 110 31.8
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.3e-08 64.3 120 28.3
Lalb_Chr19g0126241 Lupinus albus HOM05D000395 ORTHO05D000088 1.3e-08 64.3 112 31.2
MBI16_g26331_MAGBIO Magnolia biondii HOM05D000395 ORTHO05D000088 1.3e-08 64.3 110 32.7
Nitab4.5_0002126g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 1.7e-08 63.9 106 32.1
TWI09G0341 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.7e-08 63.9 99 38.4
arahy.Tifrunner.gnm1.ann1.335W22 Arachis hypogaea HOM05D000395 ORTHO05D000088 2.2e-08 63.5 145 31.7
Gohir.D13G215300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.2e-08 63.5 135 29.6
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 2.2e-08 63.5 102 31.4
Nitab4.5_0000090g0060 Nicotiana tabacum HOM05D000395 ORTHO05D000088 3.7e-08 62.8 106 31.1
arahy.Tifrunner.gnm1.ann1.KVNU80 Arachis hypogaea HOM05D000395 ORTHO05D000088 4.8e-08 62.4 145 31.0
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.8e-08 62.4 120 27.5
Lj1g0013794 Lotus japonicus HOM05D000395 ORTHO05D000088 4.8e-08 62.4 160 30.0
Lalb_Chr10g0095141 Lupinus albus HOM05D000395 ORTHO05D000088 4.8e-08 62.4 161 29.2
Prupe.7G143800 Prunus persica HOM05D000395 ORTHO05D000088 4.8e-08 62.4 106 35.8
Glyma.20G107900 Glycine max HOM05D000395 ORTHO05D000088 6.3e-08 62.0 174 25.9
TPR.G11170 Trifolium pratense HOM05D000395 ORTHO05D000088 6.3e-08 62.0 137 29.9
Lj2g0006674 Lotus japonicus HOM05D000395 ORTHO05D000088 8.3e-08 61.6 108 30.6
Nitab4.5_0002126g0050 Nicotiana tabacum HOM05D000395 ORTHO05D000088 8.3e-08 61.6 109 33.0
TPR.G11166 Trifolium pratense HOM05D000395 ORTHO05D000088 8.3e-08 61.6 153 32.7
DCAR_003837 Daucus carota HOM05D000395 ORTHO05D000088 1.1e-07 61.2 160 26.2
Glyma.10G281300 Glycine max HOM05D000395 ORTHO05D000088 1.4e-07 60.8 160 25.0
Sed0012430 Sechium edule HOM05D000395 ORTHO05D000088 1.4e-07 60.8 96 32.3
PGSC0003DMG400035388 Solanum tuberosum HOM05D000395 ORTHO05D000088 1.4e-07 60.8 104 34.6
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 1.8e-07 60.5 143 30.1
Phvul.003G007500 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 1.8e-07 60.5 193 27.5
Sed0005611 Sechium edule HOM05D000395 ORTHO05D000088 1.8e-07 60.5 105 30.5
AUR62015067 Chenopodium quinoa HOM05D000395 ORTHO05D000088 2.4e-07 60.1 109 28.4
Lj6g0021528 Lotus japonicus HOM05D000395 ORTHO05D000088 3.1e-07 59.7 184 26.6
VMungo0720G0704 Vigna mungo HOM05D000395 ORTHO05D000088 3.1e-07 59.7 193 25.9
arahy.Tifrunner.gnm1.ann1.28CQXC Arachis hypogaea HOM05D000395 ORTHO05D000088 4.1e-07 59.3 103 31.1
arahy.Tifrunner.gnm1.ann1.E6WL3P Arachis hypogaea HOM05D000395 ORTHO05D000088 4.1e-07 59.3 105 28.6
Gohir.A02G160900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.1e-07 59.3 114 32.5
Gohir.D03G019600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.1e-07 59.3 114 31.6
Gorai.013G245600 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.1e-07 59.3 215 25.1
MD02G1159700 Malus domestica HOM05D000395 ORTHO05D000088 4.1e-07 59.3 108 31.5
Psat6g097800 Pisum sativum HOM05D000395 ORTHO05D000088 4.1e-07 59.3 194 24.7
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.1e-07 59.3 111 31.5
TWI73G1024 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.1e-07 59.3 148 27.0
Glyma.09G117200 Glycine max HOM05D000395 ORTHO05D000088 5.4e-07 58.9 112 33.0
Gorai.003G020000 Gossypium raimondii HOM05D000395 ORTHO05D000088 5.4e-07 58.9 114 31.6
Lj1g0017480 Lotus japonicus HOM05D000395 ORTHO05D000088 5.4e-07 58.9 178 30.3
MD00G1020600 Malus domestica HOM05D000395 ORTHO05D000088 5.4e-07 58.9 123 31.7
RcHm_v2.0_Chr7g0211791 Rosa chinensis HOM05D000395 ORTHO05D000088 5.4e-07 58.9 100 28.0
FAN04G0695 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.0e-07 58.5 112 31.2
Nitab4.5_0000806g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 7.0e-07 58.5 101 30.7
Phvul.003G007400 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 7.0e-07 58.5 210 27.6
arahy.Tifrunner.gnm1.ann1.KKK8UB Arachis hypogaea HOM05D000395 ORTHO05D000088 9.1e-07 58.2 85 36.5
CAN.G1066.1 Capsicum annuum HOM05D000395 ORTHO05D000088 9.1e-07 58.2 143 28.7
Gohir.A12G068300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 9.1e-07 58.2 109 29.4
Glyma.10G281200 Glycine max HOM05D000395 ORTHO05D000088 1.2e-06 57.8 113 25.7
Nitab4.5_0000090g0070 Nicotiana tabacum HOM05D000395 ORTHO05D000088 1.2e-06 57.8 106 28.3
Peaxi162Scf00234g00019 Petunia axillaris HOM05D000395 ORTHO05D000088 1.2e-06 57.8 104 32.7
Phvul.003G007600 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 1.6e-06 57.4 101 35.6
arahy.Tifrunner.gnm1.ann1.29RHWF Arachis hypogaea HOM05D000395 ORTHO05D000088 2.0e-06 57.0 128 32.8
Gohir.D12G068125 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.0e-06 57.0 109 29.4
Manes.07G115300 Manihot esculenta HOM05D000395 ORTHO05D000088 2.0e-06 57.0 104 32.7
Sabra04G0097200 Salix brachista HOM05D000395 ORTHO05D000088 2.0e-06 57.0 110 30.9
Aqoxy2G00970 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 2.7e-06 56.6 103 33.0
Aqoxy4G02148 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 2.7e-06 56.6 104 30.8
arahy.Tifrunner.gnm1.ann1.2D39F8 Arachis hypogaea HOM05D000395 ORTHO05D000088 2.7e-06 56.6 120 32.5
arahy.Tifrunner.gnm1.ann1.FKVA2C Arachis hypogaea HOM05D000395 ORTHO05D000088 2.7e-06 56.6 105 27.6
arahy.Tifrunner.gnm1.ann1.KVXN1E Arachis hypogaea HOM05D000212 ORTHO05D005509 2.7e-06 56.6 177 25.4
arahy.Tifrunner.gnm1.ann1.WFT6BR Arachis hypogaea HOM05D000395 ORTHO05D000088 2.7e-06 56.6 103 30.1
Eucgr.G00890 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.7e-06 56.6 137 30.7
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 2.7e-06 56.6 99 33.3
Nitab4.5_0000090g0030 Nicotiana tabacum HOM05D000395 ORTHO05D000088 2.7e-06 56.6 101 29.7
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 3.5e-06 56.2 155 29.7
FAN13G0933 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.5e-06 56.2 112 28.6
Lj1g0021368 Lotus japonicus HOM05D000395 ORTHO05D000088 3.5e-06 56.2 200 27.0
Thecc.01G047000 Theobroma cacao HOM05D000395 ORTHO05D000088 3.5e-06 56.2 166 29.5
arahy.Tifrunner.gnm1.ann1.IR6J7S Arachis hypogaea HOM05D000395 ORTHO05D000088 4.5e-06 55.8 105 28.6
Medtr7g050710 Medicago truncatula HOM05D000395 ORTHO05D000088 4.5e-06 55.8 153 28.1
Nitab4.5_0002126g0060 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.5e-06 55.8 145 25.5
Nitab4.5_0013178g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.5e-06 55.8 183 25.1
PSO339G2136 Papaver somniferum HOM05D000395 ORTHO05D000088 4.5e-06 55.8 114 30.7
QL06p043901 Quercus lobata HOM05D000395 ORTHO05D000088 4.5e-06 55.8 166 24.7
Gohir.A04G121800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.9e-06 55.5 107 29.9
RcHm_v2.0_Chr2g0103421 Rosa chinensis HOM05D000395 ORTHO05D000088 5.9e-06 55.5 104 28.8
RcHm_v2.0_Chr2g0103461 Rosa chinensis HOM05D000395 ORTHO05D000088 5.9e-06 55.5 87 29.9
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 5.9e-06 55.5 117 29.1
COL.COLO4_11372 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.7e-06 55.1 192 27.6
Glyma.16G046700 Glycine max HOM05D000395 ORTHO05D000088 7.7e-06 55.1 137 25.5
Medtr8g103940 Medicago truncatula HOM05D000395 ORTHO05D000088 7.7e-06 55.1 97 29.9
SEGI_00043 Sequoiadendron giganteum HOM05D024899 ORTHO05D023139 7.7e-06 55.1 100 30.0
Solyc02g021260.3 Solanum lycopersicum HOM05D000395 ORTHO05D000088 7.7e-06 55.1 102 37.3
TPR.G35741 Trifolium pratense HOM05D000395 ORTHO05D000088 7.7e-06 55.1 158 29.1
TWI09G1611 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 7.7e-06 55.1 103 31.1


User provided reference genes

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