Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 5.2e-116 422.2 458 100.0
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 2.6e-99 366.7 458 71.0
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 4.3e-78 296.2 455 86.8
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.1e-57 228.4 458 79.7
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.2e-51 208.4 446 79.8
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 4.7e-48 196.4 451 77.6
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 2.8e-45 187.2 450 77.1
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 7.2e-41 172.6 453 75.5
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 9.4e-41 172.2 457 64.1
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 3.0e-39 167.2 114 72.8
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.3e-37 161.8 453 74.2
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.4e-28 131.7 457 70.9
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 9.1e-28 129.0 449 45.9
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 2.0e-27 127.9 197 60.4
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.3e-26 125.2 457 48.1
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 1.3e-26 125.2 429 35.0
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.5e-25 121.7 181 62.4
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 5.5e-25 119.8 173 63.6
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 5.5e-25 119.8 453 53.4
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.2e-24 118.6 174 62.6
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.2e-24 118.6 174 62.6
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 2.1e-24 117.9 173 63.0
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 2.8e-24 117.5 174 62.6
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 2.8e-24 117.5 174 62.6
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 4.7e-24 116.7 83 66.3
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.8e-23 114.8 450 61.1
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.0e-23 113.6 82 64.6
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 4.0e-23 113.6 450 61.8
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 5.2e-23 113.2 80 65.0
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 5.2e-23 113.2 448 58.9
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.5e-22 111.7 113 49.6
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.6e-22 110.9 427 64.9
Lalb_Chr19g0127261 Lupinus albus HOM05D005674 ORTHO05D007015 4.4e-22 110.2 159 41.5
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.7e-22 109.8 104 51.9
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.3e-21 108.6 180 59.4
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 2.2e-21 107.8 450 48.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 3.7e-21 107.1 71 70.4
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.1e-20 105.5 71 70.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.4e-20 105.1 81 61.7
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.8e-20 104.8 173 61.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 7.0e-20 102.8 67 73.1
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 1.6e-19 101.7 71 66.2
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 3.5e-19 100.5 174 59.8
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 3.5e-19 100.5 71 64.8
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.9e-19 99.8 102 48.0
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.0e-18 99.0 84 58.3
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.7e-18 98.2 69 62.3
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.7e-18 98.2 68 63.2
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 1.7e-18 98.2 68 63.2
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 2.3e-18 97.8 174 38.5
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.9e-18 97.4 69 65.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 2.9e-18 97.4 69 66.7
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.8e-18 97.1 68 64.7
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 5.0e-18 96.7 70 61.4
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.1e-17 95.5 85 54.1
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.1e-17 95.5 85 54.1
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.1e-17 95.5 67 65.7
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 1.1e-17 95.5 67 65.7
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.1e-17 95.5 67 61.2
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.9e-17 94.7 78 55.1
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.9e-17 94.7 71 60.6
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.5e-17 94.4 68 63.2
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.3e-17 94.0 182 56.6
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 3.3e-17 94.0 80 55.0
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 4.3e-17 93.6 180 56.7
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.3e-17 93.6 71 63.4
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 5.6e-17 93.2 182 56.6
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 5.6e-17 93.2 71 63.4
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 7.3e-17 92.8 71 60.6
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 9.5e-17 92.4 175 58.3
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 9.5e-17 92.4 175 58.3
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 9.5e-17 92.4 175 58.3
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 9.5e-17 92.4 175 58.3
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.6e-16 91.7 82 56.1
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.6e-16 91.7 80 52.5
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.1e-16 91.3 182 56.6
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.8e-16 90.9 71 62.0
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 2.8e-16 90.9 79 53.2
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 3.6e-16 90.5 144 67.4
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 4.7e-16 90.1 78 55.1
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.7e-16 90.1 71 62.0
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 4.7e-16 90.1 71 62.0
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 8.0e-16 89.4 79 55.7
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 8.0e-16 89.4 68 57.4
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 8.0e-16 89.4 67 61.2
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.0e-15 89.0 180 57.2
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 1.4e-15 88.6 81 53.1
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 4.0e-15 87.0 71 57.7
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 4.0e-15 87.0 81 51.9
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 5.2e-15 86.7 78 55.1
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 6.8e-15 86.3 84 48.8
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 8.9e-15 85.9 82 50.0
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.5e-14 85.1 81 50.6
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 2.0e-14 84.7 79 53.2
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.0e-14 84.7 138 70.3
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.6e-14 84.3 76 56.6
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 5.8e-14 83.2 68 55.9
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 7.5e-14 82.8 79 49.4
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 9.8e-14 82.4 81 50.6
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.3e-13 82.0 81 50.6
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.7e-13 81.6 69 55.1
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.7e-13 81.6 76 48.7
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.7e-13 80.5 78 50.0
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 4.9e-13 80.1 114 42.1
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 8.3e-13 79.3 81 46.9
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 1.1e-12 79.0 109 41.3
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.4e-12 77.8 176 55.7
Lalb_Chr02g0154491 Lupinus albus HOM05D005674 ORTHO05D007015 2.4e-12 77.8 59 62.7
Lalb_Chr02g0159181 Lupinus albus HOM05D005674 ORTHO05D007015 4.1e-12 77.0 54 70.4
Psat0s3054g0080 Pisum sativum HOM05D005674 ORTHO05D007015 1.2e-11 75.5 41 82.9
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 2.0e-11 74.7 73 49.3
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 2.0e-11 74.7 80 43.8
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.7e-11 74.3 83 42.2
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 4.6e-11 73.6 81 45.7
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 4.6e-11 73.6 52 69.2
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 6.0e-11 73.2 50 70.0
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 6.6e-10 69.7 77 42.9
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.9e-09 68.2 46 67.4
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.5e-09 67.8 78 42.3
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.3e-09 67.0 73 43.8
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 5.6e-09 66.6 48 58.3
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.1e-08 64.7 52 53.8
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.1e-08 64.7 52 53.8
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 2.8e-08 64.3 45 62.2
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.6e-08 63.9 40 65.0
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.2e-08 63.2 49 59.2
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 1.1e-07 62.4 47 61.7
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 1.8e-07 61.6 45 68.9
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.8e-07 61.6 72 43.1
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 2.3e-07 61.2 71 43.7
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 5.2e-07 60.1 49 53.1
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.8e-07 59.7 40 62.5
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 2.0e-06 58.2 132 28.8
Lalb_Chr12g0209451 Lupinus albus HOM05D005674 ORTHO05D007015 3.4e-06 57.4 49 55.1
Lalb_Chr16g0388951 Lupinus albus HOM05D001514 ORTHO05D002956 7.5e-06 56.2 33 75.8
Medtr0220s0090 Medicago truncatula HOM05D005674 ORTHO05D007015 7.5e-06 56.2 50 58.0


User provided reference genes

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