Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 0.0e+00 4672.5 2471 100.0
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 0.0e+00 4034.2 2460 86.6
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 0.0e+00 3791.1 2372 83.8
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 0.0e+00 3664.0 2465 77.6
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 0.0e+00 3591.2 2466 76.5
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 3464.1 2463 74.3
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 0.0e+00 3343.5 2453 72.9
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 3280.7 2527 69.8
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 3254.2 2572 68.4
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 0.0e+00 3221.0 2473 70.0
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 0.0e+00 2650.2 2464 57.5
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 0.0e+00 2599.7 2482 56.4
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 0.0e+00 2578.1 2464 56.8
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 0.0e+00 2536.5 2492 55.1
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 2511.9 2473 54.5
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 2506.5 2476 55.6
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 0.0e+00 2496.8 2469 55.1
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 2494.2 2469 54.6
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 0.0e+00 2491.8 2465 54.3
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 2488.4 2469 54.5
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 2475.3 2398 56.1
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 0.0e+00 2475.3 2486 54.2
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 0.0e+00 2472.6 2462 54.2
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 2456.8 2484 53.8
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 0.0e+00 2451.8 2484 53.9
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 2442.5 2467 54.4
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 0.0e+00 2432.5 2484 53.6
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 2428.7 2479 53.1
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 0.0e+00 2426.0 2466 54.1
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 2424.8 2481 53.4
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 2414.0 2509 52.8
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 0.0e+00 2392.5 2479 52.6
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 0.0e+00 2369.0 2467 53.0
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2365.9 2484 52.8
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2362.8 2483 52.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2358.9 2500 52.5
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 2357.8 2497 52.5
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 2357.4 2469 53.2
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 0.0e+00 2325.8 2295 56.2
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 0.0e+00 2312.0 2474 51.3
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 0.0e+00 2310.4 2606 50.2
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 0.0e+00 2291.2 2466 52.3
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 0.0e+00 2280.8 2634 49.6
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 0.0e+00 2264.2 2469 50.3
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 0.0e+00 2261.5 2556 49.5
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 2255.3 2482 51.1
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 0.0e+00 2252.2 2469 50.1
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 0.0e+00 2245.7 2474 50.4
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 0.0e+00 2241.8 2602 49.1
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 0.0e+00 2229.1 2472 50.8
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 0.0e+00 2196.8 2467 49.8
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 0.0e+00 2196.8 2457 49.4
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 0.0e+00 2184.5 2471 49.0
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 0.0e+00 2174.1 2471 49.5
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 0.0e+00 2151.7 2459 49.2
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 0.0e+00 2130.5 2466 48.9
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 2119.7 2508 47.8
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 2119.0 2507 48.1
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 0.0e+00 2112.4 2532 47.5
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 0.0e+00 2111.6 2475 48.4
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 0.0e+00 2107.4 2498 47.4
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 0.0e+00 2093.2 2493 48.0
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 0.0e+00 2078.1 2516 46.6
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 2065.0 2443 47.5
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 0.0e+00 2063.5 2472 47.5
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 0.0e+00 2048.5 2482 46.5
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 2043.9 2254 51.1
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 2015.4 2470 46.2
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 0.0e+00 1995.7 2463 45.3
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 0.0e+00 1978.0 2479 46.1
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 0.0e+00 1956.0 2474 45.8
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 0.0e+00 1929.1 2465 45.4
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1927.1 2472 45.3
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 0.0e+00 1909.0 2458 45.5
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1907.9 2461 44.5
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1901.7 2080 49.9
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1899.0 2462 45.1
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 0.0e+00 1856.3 2465 44.2
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 1847.4 2793 40.0
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 0.0e+00 1835.8 2269 46.7
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1830.5 2478 43.3
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1823.5 2463 44.0
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1810.8 2468 43.5
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1788.5 2469 42.7
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 0.0e+00 1780.4 2557 42.5
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1739.9 2462 42.8
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1739.9 2445 42.7
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1727.6 2462 42.4
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 0.0e+00 1716.0 2488 42.1
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1694.1 2489 41.8
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 0.0e+00 1680.6 2485 41.4
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1634.8 2495 40.6
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1593.6 2499 40.1
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1590.9 2469 40.4
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 0.0e+00 1572.8 1949 45.8
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1555.8 2479 40.3
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1555.4 2446 40.2
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1554.7 2468 39.5
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 0.0e+00 1500.0 1605 52.6
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1321.2 2017 41.7
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 1275.0 1387 51.9
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1207.2 1748 41.2
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1202.6 1748 41.5
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 0.0e+00 1189.9 2627 32.2
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 0.0e+00 1186.8 2676 31.4
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 0.0e+00 1162.9 1015 59.9
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 0.0e+00 1099.0 1291 47.4
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 0.0e+00 1090.9 1454 44.0
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 0.0e+00 1079.3 1353 46.1
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.6e-299 1032.7 1085 51.5
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.6e-299 1032.7 1085 51.5
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.5e-297 1026.9 1414 42.4
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 6.2e-288 995.7 2526 30.0
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 9.9e-278 961.8 1153 47.8
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 4.3e-273 946.4 2242 31.9
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.2e-269 934.1 968 51.3
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 2.5e-257 894.0 2479 29.4
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 9.0e-255 885.6 1077 46.5
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 6.3e-224 783.1 729 57.9
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 5.6e-188 663.7 1041 40.2
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 1.3e-184 652.5 1051 39.0
SEGI_06154 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 8.6e-173 613.2 1064 36.0
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 2.0e-169 602.1 839 44.9
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 1.2e-163 582.8 528 56.6
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 1.2e-161 576.2 1575 29.8
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 7.1e-151 540.4 582 52.7
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 1.4e-146 526.2 891 39.1
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 3.7e-131 474.9 333 77.2
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.1e-122 444.9 404 55.0
Cpa.g.sc83.36 Carica papaya HOM05D003115 ORTHO05D003595 4.5e-113 414.8 539 44.7
CANSAT78G0886 Cannabis sativa HOM05D003115 ORTHO05D003595 1.5e-108 399.8 403 52.4
BcaC05g26358 Brassica carinata HOM05D003115 ORTHO05D003595 1.3e-107 396.7 553 42.7
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 2.9e-96 359.0 242 76.4
BolC5t31100H Brassica oleracea HOM05D003115 ORTHO05D003595 8.5e-96 357.5 952 31.1
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 3.5e-89 335.5 1112 28.1
Cc00_g35730 Coffea canephora HOM05D003115 ORTHO05D003595 3.7e-83 315.5 324 54.3
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 5.4e-82 311.6 531 36.5
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.3e-80 306.2 1080 27.5
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 8.3e-75 287.7 2468 21.2
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 1.1e-71 277.3 1096 24.9
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 4.1e-66 258.8 415 40.0
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 8.1e-62 244.6 395 34.4
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 1.8e-61 243.4 1200 23.6
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.5e-60 240.4 303 44.6
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 1.7e-59 236.9 830 27.2
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 8.6e-56 224.6 256 48.8
Psat3g191280 Pisum sativum HOM05D003115 ORTHO05D003595 1.5e-55 223.8 172 72.1
CiPaw.14G076400 Carya illinoinensis HOM05D003115 ORTHO05D003595 4.3e-55 222.2 303 43.6
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 3.1e-53 216.1 265 46.4
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 2.3e-48 199.9 218 51.4
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 1.7e-43 183.7 675 27.1
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 1.5e-39 170.6 284 39.1
Rhsim06G0083800 Rhododendron simsii HOM05D003115 ORTHO05D003595 9.9e-36 157.9 225 47.1
CDE07G1385 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 9.3e-34 151.4 215 39.1
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.1e-33 150.2 117 57.3
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 3.9e-32 146.0 182 45.6
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 1.6e-30 140.6 323 30.7
Cpa.g.c46004 Carica papaya HOM05D003115 ORTHO05D003595 8.1e-30 138.3 128 60.2
Rhsim07G0171200 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.0e-28 133.7 253 38.3
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 2.4e-26 126.7 105 59.0
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 9.3e-26 124.8 105 58.1
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 3.4e-20 106.3 154 35.1
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.5e-20 105.9 145 42.1
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 6.5e-19 102.1 130 46.2
Actinidia30876 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.4e-18 100.9 131 41.2
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 3.2e-18 99.8 83 60.2
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 7.1e-18 98.6 95 54.7
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 7.1e-18 98.6 86 58.1
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.2e-17 97.8 183 39.3
Zm00001eb092010 Zea mays HOM05D003115 ORTHO05D029342 7.9e-17 95.1 181 34.3
Zm00001eb154910 Zea mays HOM05D003115 ORTHO05D029342 7.9e-17 95.1 181 34.3
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 2.3e-16 93.6 80 57.5
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.5e-15 90.1 221 32.6
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 5.7e-15 89.0 95 50.5
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.1e-10 74.7 115 42.6
RcHm_v2.0_Chr2g0155431 Rosa chinensis HOM05D003115 ORTHO05D003595 2.5e-10 73.6 76 53.9
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 3.6e-09 69.7 58 62.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.1e-07 64.7 126 31.7
BcaC05g26356 Brassica carinata HOM05D003115 ORTHO05D003595 1.9e-07 63.9 94 35.1
Haze_25244 Corylus avellana HOM05D003115 ORTHO05D003595 9.7e-07 61.6 52 57.7
PGSC0003DMG400007745 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.8e-06 59.3 56 42.9
RcHm_v2.0_Chr6g0271321 Rosa chinensis HOM05D000001 ORTHO05D010702 6.3e-06 58.9 64 53.1


User provided reference genes

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