Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 1.9e-66 255.8 133 100.0
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 5.9e-60 234.2 132 89.4
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.1e-55 219.9 132 81.8
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 6.3e-54 214.2 132 82.6
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 6.3e-54 214.2 132 81.8
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 5.3e-53 211.1 132 80.3
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 9.1e-53 210.3 132 81.1
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 1.2e-52 209.9 132 78.8
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 1.0e-51 206.8 156 69.9
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 1.7e-51 206.1 132 78.8
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 3.8e-51 204.9 132 78.0
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 1.1e-50 203.4 132 78.8
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.4e-50 203.0 132 75.8
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 2.5e-50 202.2 132 76.5
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.2e-50 201.8 132 77.3
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 3.2e-50 201.8 132 78.0
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 4.2e-50 201.4 132 77.3
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 7.2e-50 200.7 132 76.5
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 9.4e-50 200.3 130 77.7
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.2e-49 199.9 132 75.0
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.2e-49 199.9 132 75.0
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.6e-49 199.5 132 75.8
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.6e-49 199.5 132 76.5
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 2.1e-49 199.1 132 75.8
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.7e-49 198.7 132 75.8
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 3.6e-49 198.4 132 74.2
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.7e-49 198.0 132 73.5
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 6.1e-49 197.6 132 75.8
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 7.9e-49 197.2 131 75.6
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.4e-48 196.4 132 76.5
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 1.4e-48 196.4 132 75.0
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 1.8e-48 196.1 131 73.3
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 2.3e-48 195.7 132 75.0
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 5.1e-48 194.5 132 74.2
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 5.1e-48 194.5 132 74.2
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 8.8e-48 193.7 132 75.8
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.1e-47 193.4 132 75.0
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 4.4e-47 191.4 132 72.0
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 4.4e-47 191.4 132 72.0
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 4.4e-47 191.4 132 72.7
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 9.7e-47 190.3 130 74.6
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 2.2e-46 189.1 132 71.2
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 2.2e-46 189.1 132 73.5
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 3.7e-46 188.3 132 68.9
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.7e-46 188.3 132 72.7
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 6.3e-46 187.6 132 72.0
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 6.3e-46 187.6 132 72.0
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 8.2e-46 187.2 132 72.0
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.8e-45 186.0 131 71.0
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 1.8e-45 186.0 131 71.0
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.1e-45 185.3 134 71.6
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 3.1e-45 185.3 148 66.2
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 4.1e-45 184.9 132 68.9
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 5.3e-45 184.5 132 71.2
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 5.3e-45 184.5 132 69.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 7.0e-45 184.1 132 70.5
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.2e-44 183.3 132 68.9
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.2e-44 183.3 132 68.9
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.5e-44 183.0 132 72.0
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 3.5e-44 181.8 134 69.4
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 4.5e-44 181.4 134 71.6
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 5.9e-44 181.0 134 70.9
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 7.7e-44 180.6 132 72.7
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.4e-42 176.4 134 66.4
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.2e-41 173.3 134 64.2
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 1.6e-41 172.9 133 67.7
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 2.7e-41 172.2 134 67.2
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 4.7e-41 171.4 128 67.2
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 4.7e-41 171.4 132 66.7
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 6.1e-41 171.0 133 66.9
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 8.0e-41 170.6 134 66.4
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 2.3e-40 169.1 133 66.2
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 8.8e-40 167.2 132 65.2
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 5.7e-39 164.5 111 73.9
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 9.7e-39 163.7 132 65.9
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 1.7e-38 162.9 133 66.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 2.2e-38 162.5 173 52.0
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.2e-38 162.5 132 65.2
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 4.8e-38 161.4 133 64.7
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 8.2e-38 160.6 133 63.9
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 4.1e-37 158.3 132 58.3
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 5.3e-37 157.9 133 62.4
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 7.0e-37 157.5 132 59.1
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 1.6e-36 156.4 129 62.0
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.5e-36 154.8 135 62.2
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.0e-35 153.7 134 60.4
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.7e-35 152.9 135 60.0
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 6.5e-35 151.0 165 52.7
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 6.5e-35 151.0 133 60.9
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 6.5e-35 151.0 133 60.9
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.5e-34 149.8 133 60.2
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 1.5e-34 149.8 133 60.2
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.5e-34 149.1 131 58.0
TPR.G31177 Trifolium pratense HOM05D003115 ORTHO05D003595 3.2e-34 148.7 75 97.3
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.6e-33 146.4 112 64.3
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.6e-33 146.4 129 55.8
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 3.6e-33 145.2 126 57.1
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 4.7e-33 144.8 200 45.0
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.4e-32 143.3 135 57.0
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 2.3e-32 142.5 136 56.6
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 2.3e-32 142.5 136 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.3e-30 136.7 125 53.6
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 1.8e-29 132.9 125 57.6
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 7.7e-28 127.5 134 49.3
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 1.5e-26 123.2 137 51.1
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 3.7e-22 108.6 121 51.2
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.4e-21 105.9 64 76.6
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 2.5e-18 95.9 103 51.5
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 2.5e-18 95.9 103 51.5
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 3.3e-18 95.5 117 44.4
BolC5t31125H Brassica oleracea HOM05D003115 ORTHO05D003595 5.5e-18 94.7 111 45.9
SHI16728 Sapria himalayana HOM05D003115 ORTHO05D003595 2.1e-17 92.8 112 45.5
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 1.0e-16 90.5 69 66.7
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.0e-16 90.5 69 69.6
C05p24020 Brassica napus HOM05D003115 ORTHO05D003595 2.8e-14 82.4 111 42.3
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 4.9e-14 81.6 118 38.1
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.0e-11 73.9 49 77.6
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 1.0e-11 73.9 49 81.6
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 1.3e-11 73.6 119 37.0
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 5.0e-11 71.6 103 40.8
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 5.0e-11 71.6 103 40.8
Hma1.2p1_0039F.1_g024580 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 1.1e-10 70.5 64 57.8
Cc00_g09580 Coffea canephora HOM05D003115 ORTHO05D003595 8.0e-09 64.3 55 54.5
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 8.9e-08 60.8 49 67.3
AT5G36722 Arabidopsis thaliana HOM05D003115 ORTHO05D038785 8.9e-08 60.8 58 62.1
AT5G36810 Arabidopsis thaliana HOM05D003115 ORTHO05D038785 8.9e-08 60.8 58 62.1
BcaB06g28128 Brassica carinata HOM05D022923 ORTHO05D024227 1.5e-07 60.1 48 68.8


User provided reference genes

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