Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 0.0e+00 2139.8 1105 100.0
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 0.0e+00 1894.4 1073 90.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 0.0e+00 1884.8 1073 89.5
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1822.8 1074 86.3
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 0.0e+00 1636.7 1075 78.6
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1630.5 1073 78.6
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1626.3 1073 78.4
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1544.3 1075 74.5
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1526.9 1074 74.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 0.0e+00 1485.7 1074 72.7
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1466.1 1073 72.3
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 0.0e+00 1369.8 945 75.6
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1369.0 1073 68.8
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1152.5 1103 57.4
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1140.9 1119 56.3
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1126.3 1113 57.1
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1120.5 1109 56.7
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1111.7 1107 56.0
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1099.0 1114 55.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1087.0 1087 57.0
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1123 54.9
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1078.9 1099 55.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1075.1 1106 55.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1075.1 1104 54.7
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1075.1 1106 55.2
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.5e-310 1069.7 1107 54.7
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.2e-307 1060.1 1107 54.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.2e-307 1060.1 1107 54.3
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 9.8e-302 1040.4 1094 54.8
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 2.8e-301 1038.9 1124 53.3
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 4.2e-297 1025.0 1064 55.0
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.3e-293 1013.4 1087 53.3
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 4.1e-292 1008.4 1091 53.3
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 7.0e-292 1007.7 1133 52.3
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.7e-291 1005.7 1080 54.0
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 5.9e-291 1004.6 1108 53.5
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 7.8e-291 1004.2 1099 52.9
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 5.6e-289 998.0 1102 53.6
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 8.0e-288 994.2 986 56.8
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 6.8e-287 991.1 1106 52.8
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.5e-286 989.9 1082 53.0
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 7.5e-286 987.6 1106 52.1
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 2.9e-285 985.7 1118 51.4
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 4.9e-285 984.9 1087 52.0
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 2.7e-283 979.2 1090 51.7
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.1e-281 973.8 1093 52.2
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.1e-281 973.8 1080 52.4
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.1e-279 965.7 1122 50.5
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 8.9e-279 964.1 1095 51.8
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 1.7e-277 959.9 1008 54.2
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 2.2e-277 959.5 1133 50.5
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.1e-276 954.5 968 55.7
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.5e-273 946.8 1124 49.6
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 3.6e-272 942.2 1083 51.5
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 6.2e-272 941.4 1117 49.6
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.4e-271 940.3 1160 48.0
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 8.9e-271 937.6 1116 50.3
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.2e-270 937.2 1074 51.5
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.6e-264 916.8 1097 49.7
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.1e-263 914.1 1167 47.3
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.3e-261 907.1 925 56.2
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 6.4e-261 904.8 1124 48.8
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.9e-260 903.3 939 54.6
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.9e-255 884.8 1100 48.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 9.0e-255 884.4 1082 47.7
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 9.9e-254 880.9 1077 48.2
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.3e-250 869.8 1087 47.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.1e-249 867.5 1081 47.3
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.5e-249 867.1 1097 47.8
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.9e-249 866.7 1085 47.8
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.2e-248 861.7 1098 47.6
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.8e-247 860.1 1092 47.4
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.2e-246 857.4 1080 46.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.5e-246 857.1 1084 47.0
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.4e-246 855.9 1113 48.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 7.6e-246 854.7 1083 46.8
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 7.6e-246 854.7 1083 46.8
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 7.6e-246 854.7 1081 47.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 7.6e-246 854.7 1088 47.3
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.7e-245 853.6 1083 47.0
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.8e-245 852.4 1112 47.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 4.9e-245 852.0 1081 47.6
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1083 46.5
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1081 47.6
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.9e-244 850.1 1080 47.6
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.6e-243 847.0 1100 47.0
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 2.7e-243 846.3 1082 48.2
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 7.9e-243 844.7 1022 48.4
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 3.0e-242 842.8 1081 47.5
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.1e-242 842.0 856 57.1
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.9e-241 840.1 1081 47.3
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 9.6e-241 837.8 1074 47.0
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 9.6e-241 837.8 1075 48.3
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 8.1e-240 834.7 1103 45.9
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 4.0e-239 832.4 1116 46.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.0e-238 830.1 1089 46.7
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.4e-236 823.9 1146 45.8
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 3.2e-236 822.8 1056 48.0
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.6e-235 818.9 1084 46.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 7.9e-235 818.1 1120 46.7
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.1e-232 810.1 1101 45.8
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.0e-230 803.5 1082 45.2
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 5.5e-228 795.4 1124 44.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.2e-224 783.5 893 51.6
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 5.0e-221 772.3 685 61.9
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 3.2e-220 769.6 1114 43.5
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.2e-219 767.7 685 62.0
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 5.3e-215 752.3 645 63.9
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-209 734.2 637 63.3
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 3.7e-208 729.6 746 56.6
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.7e-203 713.4 879 48.6
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 4.0e-202 709.5 1123 41.3
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.7e-200 704.1 638 61.1
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 8.2e-200 701.8 761 53.6
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.5e-196 691.0 1110 41.2
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.6e-195 687.6 836 49.9
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 6.8e-194 682.2 534 68.5
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.3e-192 675.2 859 47.7
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.5e-188 663.7 514 68.3
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 5.4e-183 646.0 833 48.4
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.9e-181 640.2 943 44.2
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.3e-180 636.7 624 59.3
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 7.3e-180 635.6 421 76.0
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.0e-169 600.9 1088 39.2
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 3.6e-163 580.1 629 53.7
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.4e-144 515.8 908 39.4
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 4.2e-119 433.7 725 41.1
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.6e-118 431.8 248 88.3
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.6e-118 431.8 248 88.3
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.1e-114 419.1 760 38.0
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.2e-112 411.4 440 54.8
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 6.1e-110 403.3 666 39.5
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.1e-102 376.7 594 42.1
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-101 375.6 594 41.9
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.7e-91 342.0 308 55.5
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.6e-86 325.5 186 87.1
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 1.7e-67 262.3 610 35.2
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.2e-54 219.5 198 56.1
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.0e-53 214.5 668 29.6
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 9.8e-52 209.9 575 30.4
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 5.8e-44 184.1 121 78.5
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.4e-42 178.7 134 68.7
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.0e-40 173.3 168 57.7
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 4.3e-39 167.9 91 91.2
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 3.2e-34 151.8 91 79.1
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.7e-33 148.7 159 56.0
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-29 136.7 180 41.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 4.9e-19 101.3 67 67.2
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.9e-18 99.4 365 29.0
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 4.0e-13 81.6 114 36.8
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.6e-09 68.2 228 30.3
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 4.6e-09 68.2 111 34.2
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.0e-08 67.0 378 25.7
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 1.3e-08 66.6 142 32.4
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 1.8e-08 66.2 110 34.5
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 5.6e-07 61.2 125 36.8
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 1.6e-06 59.7 210 25.2


User provided reference genes

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