Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.4e-58 228.0 109 100.0
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.0e-46 189.9 106 87.7
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-38 161.8 113 77.0
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 6.3e-36 154.1 113 72.6
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.2e-36 153.7 113 72.6
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.4e-35 152.1 114 73.7
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.5e-34 147.9 116 71.6
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.9e-33 145.2 113 69.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.9e-33 145.2 113 69.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.1e-32 143.3 115 67.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.5e-32 142.9 112 68.8
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 2.7e-31 138.7 116 62.1
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.4e-30 136.3 115 64.3
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 7.5e-29 130.6 100 69.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 9.8e-29 130.2 115 61.7
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 4.8e-28 127.9 114 61.4
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.4e-27 126.3 115 57.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.4e-27 126.3 118 57.6
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 4.1e-27 124.8 115 58.3
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.2e-26 123.2 116 57.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 5.0e-25 117.9 113 56.6
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-24 116.7 116 54.3
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-24 116.7 116 54.3
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-24 116.7 116 54.3
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 3.3e-24 115.2 116 57.8
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 9.5e-24 113.6 116 54.3
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.8e-23 112.1 116 54.3
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.8e-23 112.1 105 54.3
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 3.6e-23 111.7 107 55.1
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 3.6e-23 111.7 120 52.5
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.6e-23 111.7 115 52.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 4.7e-23 111.3 105 58.1
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 4.7e-23 111.3 117 53.8
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.2e-22 107.8 117 50.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 8.9e-22 107.1 115 53.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.9e-22 107.1 107 56.1
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.5e-21 106.3 115 55.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.6e-21 105.5 115 51.3
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.4e-21 105.1 116 51.7
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.4e-21 105.1 116 51.7
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.4e-21 105.1 117 49.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.4e-21 105.1 116 52.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-20 103.2 100 56.0
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.7e-20 102.8 117 50.4
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.7e-20 102.8 105 51.4
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.2e-20 102.4 99 53.5
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.8e-20 102.1 98 53.1
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 4.9e-20 101.3 102 52.0
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 8.3e-20 100.5 115 47.0
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.1e-19 100.1 118 50.8
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.1e-19 100.1 118 50.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-19 100.1 117 50.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.8e-19 99.4 107 48.6
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.1e-19 98.6 106 51.9
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 4.1e-19 98.2 111 53.2
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.1e-19 98.2 101 52.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 7.0e-19 97.4 116 50.0
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 7.0e-19 97.4 122 49.2
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 9.2e-19 97.1 119 51.3
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 9.2e-19 97.1 119 51.3
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 9.2e-19 97.1 114 55.3
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.2e-18 96.7 105 53.3
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.6e-18 96.3 110 50.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.0e-18 95.9 106 51.9
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.7e-18 95.5 101 53.5
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.5e-18 95.1 100 52.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 4.5e-18 94.7 106 50.0
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.9e-18 94.4 115 51.3
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-17 93.2 115 50.4
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-17 93.2 116 49.1
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.7e-17 92.8 100 52.0
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-17 92.8 108 49.1
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.3e-17 92.4 112 49.1
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.3e-17 92.4 113 46.9
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.8e-17 91.7 107 50.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 3.8e-17 91.7 126 47.6
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 5.0e-17 91.3 104 46.2
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.0e-17 91.3 85 57.6
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.6e-17 90.9 115 48.7
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-16 90.1 116 48.3
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.9e-16 89.4 116 50.9
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.5e-16 89.0 108 48.1
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.5e-16 89.0 113 47.8
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.6e-16 87.8 118 45.8
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.6e-15 86.3 114 44.7
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.8e-15 85.5 102 51.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.6e-15 85.1 105 47.6
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 4.7e-15 84.7 110 44.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.7e-15 84.7 117 47.0
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 6.1e-15 84.3 104 46.2
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.0e-14 83.6 107 47.7
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.8e-14 82.8 103 47.6
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.8e-14 82.8 103 47.6
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.3e-14 82.4 113 44.2
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.3e-14 82.4 92 50.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.0e-14 82.0 85 45.9
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 4.0e-14 81.6 108 44.4
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.5e-13 79.7 104 44.2
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-13 79.7 102 46.1
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.6e-13 79.0 101 45.5
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.4e-13 78.2 105 43.8
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 9.8e-13 77.0 110 45.5
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.7e-12 76.3 108 44.4
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.7e-12 75.1 104 41.3
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 104 41.3
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.7e-12 75.1 104 41.3
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 4.9e-12 74.7 104 41.3
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 8.3e-12 73.9 104 40.4
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.1e-11 73.6 104 40.4
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.4e-11 73.2 110 40.9
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.9e-11 72.8 115 40.0
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.9e-11 72.8 63 57.1
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.2e-11 72.0 100 39.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 3.2e-11 72.0 104 40.4
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.1e-11 71.6 104 40.4
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.1e-11 71.6 98 44.9
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.4e-11 71.2 104 39.4
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.2e-10 70.1 103 41.7
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.2e-10 70.1 102 41.2
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.6e-10 69.7 114 38.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.0e-10 69.3 100 44.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.5e-10 68.6 110 40.9
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.6e-10 68.2 100 43.0
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 6.0e-10 67.8 99 40.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 7.8e-10 67.4 104 39.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 7.8e-10 67.4 104 39.4
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 7.8e-10 67.4 114 39.5
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 7.8e-10 67.4 80 41.2
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-09 67.0 104 37.5
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.0e-09 67.0 104 37.5
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.3e-09 66.6 104 39.4
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.7e-09 66.2 114 36.0
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 3.0e-09 65.5 109 34.9
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.9e-09 65.1 106 36.8
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.9e-09 65.1 105 37.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 5.0e-09 64.7 107 39.3
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-08 63.2 106 41.5
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.3e-08 61.6 95 37.9
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 7.3e-08 60.8 122 38.5
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 1.6e-07 59.7 99 35.4
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.6e-07 59.7 104 38.5
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.8e-07 58.9 101 38.6
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 2.8e-07 58.9 91 40.7
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 6.2e-07 57.8 95 41.1
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.3e-06 55.8 48 58.3


User provided reference genes

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