Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 1.2e-109 399.8 193 100.0
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.5e-104 382.9 193 95.3
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 4.8e-95 351.3 194 87.6
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 4.9e-92 341.3 192 86.5
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 1.4e-91 339.7 192 85.9
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 8.2e-87 323.9 198 79.3
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 5.8e-85 317.8 197 78.2
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.9e-83 312.8 197 77.7
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.2e-82 310.1 198 75.8
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 3.5e-82 308.5 198 77.3
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.6e-79 299.7 213 70.4
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 3.4e-77 292.0 194 74.7
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.3e-72 275.4 161 83.9
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 4.8e-71 271.6 195 68.2
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.3e-70 268.1 195 66.2
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.6e-69 265.8 196 66.3
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.7e-68 263.1 195 66.7
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.2e-68 262.7 194 67.0
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.8e-68 261.9 197 66.5
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 2.5e-67 259.2 189 65.6
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 2.5e-67 259.2 195 65.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 4.2e-67 258.5 197 65.0
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.5e-67 258.1 194 64.9
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 7.2e-67 257.7 193 65.3
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 7.2e-67 257.7 190 66.3
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 2.1e-66 256.1 191 65.4
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 2.7e-66 255.8 192 64.1
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 3.6e-66 255.4 192 64.6
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 7.9e-66 254.2 195 65.1
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.0e-65 253.8 195 64.6
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.0e-65 253.8 206 63.6
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.8e-65 253.1 191 61.8
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.3e-65 252.7 195 64.1
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 3.0e-65 252.3 190 65.8
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.0e-65 252.3 184 65.2
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 3.9e-65 251.9 193 63.7
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 3.9e-65 251.9 187 65.2
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 5.1e-65 251.5 196 63.8
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 5.1e-65 251.5 190 66.3
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 6.7e-65 251.1 190 65.3
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.7e-65 251.1 196 61.2
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 8.8e-65 250.8 194 62.9
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 8.8e-65 250.8 195 62.6
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 1.5e-64 250.0 206 58.7
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.5e-64 250.0 193 63.7
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 2.0e-64 249.6 161 76.4
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 2.6e-64 249.2 271 51.3
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 3.3e-64 248.8 190 64.2
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.3e-63 246.9 192 62.0
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 3.7e-63 245.4 199 61.3
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 6.3e-63 244.6 214 57.9
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.1e-62 243.8 190 61.6
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.4e-62 242.7 154 77.9
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.1e-62 242.3 187 62.6
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 4.1e-62 241.9 197 61.4
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.1e-62 240.7 187 62.6
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 9.1e-62 240.7 187 62.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.2e-61 240.4 195 61.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.5e-61 240.0 196 61.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 5.9e-61 238.0 195 61.5
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 7.7e-61 237.7 210 58.6
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.7e-60 236.5 202 57.4
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 3.8e-60 235.3 196 57.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 5.0e-60 235.0 195 60.0
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 6.5e-60 234.6 125 82.4
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 6.5e-60 234.6 125 82.4
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.5e-59 232.6 193 58.5
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 2.5e-59 232.6 124 82.3
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 3.2e-59 232.3 186 61.8
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 7.2e-59 231.1 126 81.7
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 7.2e-59 231.1 187 61.5
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 9.4e-59 230.7 123 82.1
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 2.1e-58 229.6 196 56.6
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.6e-58 228.8 121 83.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 4.7e-58 228.4 129 77.5
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.1e-58 228.0 196 57.7
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.0e-57 227.3 185 61.1
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.4e-57 226.9 195 54.4
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.4e-57 226.9 193 58.0
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.3e-57 226.1 185 61.1
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 3.9e-57 225.3 187 57.2
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.5e-56 223.4 123 78.9
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.5e-56 223.4 184 57.6
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 2.0e-56 223.0 183 57.9
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 7.4e-56 221.1 123 78.9
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.2e-55 219.5 172 64.5
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 3.7e-55 218.8 201 57.2
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.8e-55 218.4 194 58.2
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 6.3e-55 218.0 188 57.4
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.9e-53 211.5 194 56.7
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 2.2e-52 209.5 179 57.0
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 6.5e-52 208.0 254 46.5
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.5e-52 208.0 193 56.0
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 5.5e-51 204.9 121 69.4
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 7.2e-51 204.5 195 51.8
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 7.2e-51 204.5 124 66.9
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.2e-50 203.8 224 47.3
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.2e-50 203.8 195 51.8
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 2.3e-49 199.5 126 75.4
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 8.8e-49 197.6 158 64.6
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 4.4e-48 195.3 253 43.9
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.3e-47 193.7 114 73.7
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 6.3e-47 191.4 118 70.3
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.0e-44 184.1 136 58.8
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 5.5e-43 178.3 94 81.9
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.5e-40 170.2 113 58.4
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 4.9e-39 165.2 91 91.2
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 6.3e-39 164.9 128 61.7
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 8.3e-39 164.5 123 56.9
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.4e-38 161.8 191 46.1
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 5.4e-38 161.8 113 57.5
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.0e-36 157.5 174 51.7
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.5e-35 153.7 201 44.3
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 8.9e-33 144.4 132 57.6
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 2.6e-32 142.9 120 63.3
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 7.5e-32 141.4 125 48.8
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.1e-30 137.5 130 48.5
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 5.4e-30 135.2 63 96.8
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 5.0e-28 128.6 126 53.2
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 2.5e-27 126.3 259 33.2
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 5.6e-27 125.2 156 48.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.1e-26 123.2 100 45.0
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.8e-26 122.9 97 57.7
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.8e-25 120.2 117 46.2
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 4.4e-24 115.5 96 52.1
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 4.4e-24 115.5 137 49.6
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.5e-24 114.8 58 82.8
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 8.3e-23 111.3 58 77.6
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.4e-22 110.5 95 46.3
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.3e-20 103.2 117 38.5
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 9.5e-19 97.8 104 44.2
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.4e-17 94.0 112 46.4
Medtr8g045467 Medicago truncatula HOM05D005520 ORTHO05D006633 1.4e-14 84.0 65 72.3
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 6.0e-13 78.6 114 40.4
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 7.8e-13 78.2 115 39.1
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 5.1e-12 75.5 112 42.9
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 7.3e-11 71.6 40 72.5
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.1e-09 67.8 46 58.7
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.3e-09 66.6 35 74.3
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 2.3e-09 66.6 35 74.3


User provided reference genes

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