Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 6.9e-173 610.5 303 100.0
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 6.9e-125 451.1 310 75.5
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.7e-102 376.7 302 69.9
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 3.2e-98 362.5 305 65.6
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 2.2e-94 349.7 315 62.5
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.8e-93 346.7 313 62.9
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 2.7e-92 342.8 308 62.3
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 1.8e-88 330.1 313 60.1
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 3.7e-86 322.4 339 56.0
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 2.6e-79 299.7 303 54.8
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 5.4e-77 292.0 308 54.2
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 1.8e-72 276.9 323 51.1
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 2.6e-71 273.1 305 50.5
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 4.4e-71 272.3 324 50.0
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 9.2e-69 264.6 302 48.7
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.2e-68 264.2 309 48.2
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 8.1e-65 251.5 229 61.6
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 5.2e-64 248.8 322 46.9
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 1.5e-63 247.3 308 46.1
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 2.0e-63 246.9 314 45.9
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.7e-62 243.8 305 46.9
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 2.4e-61 240.0 298 46.3
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 9.2e-61 238.0 307 44.6
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 2.7e-60 236.5 312 44.9
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 2.3e-59 233.4 310 44.5
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 1.1e-58 231.1 315 42.9
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.9e-58 230.3 310 44.5
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 3.3e-58 229.6 306 45.1
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 4.7e-57 225.7 307 45.9
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 8.1e-57 224.9 307 45.0
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.2e-55 221.1 313 42.8
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 5.8e-55 218.8 313 44.1
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 9.9e-55 218.0 312 42.6
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 1.7e-54 217.2 288 44.8
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 2.2e-54 216.9 326 40.2
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 3.2e-53 213.0 316 42.4
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 5.4e-53 212.2 314 41.7
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 5.4e-53 212.2 314 41.7
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.7e-51 207.2 306 43.1
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 2.3e-51 206.8 314 42.0
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.3e-51 206.8 315 41.3
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 2.3e-51 206.8 309 41.1
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 7.3e-50 201.8 321 38.3
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 1.3e-49 201.1 321 38.9
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.4e-48 197.6 312 38.5
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.8e-48 197.2 296 39.5
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 1.8e-48 197.2 296 39.5
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.9e-48 195.3 312 39.1
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.5e-47 194.1 284 41.2
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.8e-47 192.2 283 40.6
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 5.8e-47 192.2 308 37.3
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 1.7e-46 190.7 285 41.8
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 2.9e-46 189.9 319 37.6
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 3.8e-46 189.5 292 38.7
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 1.1e-45 188.0 316 37.0
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 1.4e-45 187.6 316 38.3
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 1.9e-45 187.2 108 88.0
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 3.2e-45 186.4 305 37.4
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 4.2e-45 186.0 308 36.7
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 7.1e-45 185.3 273 39.6
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 1.2e-44 184.5 278 39.9
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 2.7e-44 183.3 295 42.4
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 7.9e-44 181.8 315 37.5
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 1.3e-43 181.0 275 39.3
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.8e-43 180.6 307 38.1
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.8e-43 180.6 277 39.7
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 3.9e-43 179.5 308 36.4
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 3.9e-43 179.5 273 42.1
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 3.9e-43 179.5 306 40.8
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 8.7e-43 178.3 307 37.8
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.9e-42 177.2 309 37.9
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 5.6e-42 175.6 298 36.9
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 2.1e-41 173.7 303 36.3
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 2.8e-41 173.3 279 39.1
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 6.2e-41 172.2 300 37.7
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.1e-40 171.4 305 38.7
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 2.0e-39 167.2 311 37.3
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 1.3e-38 164.5 293 36.2
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 1.7e-38 164.1 124 67.7
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 2.2e-38 163.7 305 36.1
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 8.4e-38 161.8 286 36.7
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.5e-37 159.1 236 42.8
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 5.5e-37 159.1 282 36.5
TPR.G40619 Trifolium pratense HOM05D007109 ORTHO05D008813 7.1e-37 158.7 99 83.8
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.2e-36 157.9 304 34.5
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 7.9e-36 155.2 275 34.9
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.0e-35 154.8 317 34.1
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.0e-35 154.8 264 36.4
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 1.8e-35 154.1 291 34.4
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 8.7e-35 151.8 308 32.8
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.5e-34 150.2 315 36.5
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 4.3e-34 149.4 283 34.6
TPR.G21941 Trifolium pratense HOM05D007109 ORTHO05D008813 5.6e-34 149.1 94 83.0
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 2.1e-33 147.1 301 34.6
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 1.4e-32 144.4 286 34.3
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 2.6e-31 140.2 317 33.8
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 4.5e-31 139.4 284 33.1
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.3e-30 137.9 293 35.5
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 2.3e-27 127.1 289 33.6
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 6.7e-27 125.6 331 30.5
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 8.7e-27 125.2 292 32.9
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 3.3e-26 123.2 297 30.6
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 7.6e-23 112.1 286 29.0
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.0e-22 111.7 291 29.2
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.2e-20 104.8 108 53.7
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 3.9e-19 99.8 139 41.0
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 5.0e-14 82.8 211 30.3
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 9.4e-13 78.6 118 40.7
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 9.4e-13 78.6 118 40.7
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 1.2e-12 78.2 124 36.3
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 6.7e-11 72.4 323 25.1
ClCG06G003470 Citrullus lanatus HOM05D002440 ORTHO05D002576 2.2e-09 67.4 306 25.8
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 4.8e-09 66.2 320 23.8
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 8.2e-09 65.5 300 23.7
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 8.2e-09 65.5 300 23.7
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 1.1e-08 65.1 300 23.7
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 1.1e-08 65.1 299 26.1
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 1.4e-08 64.7 284 24.6
Lalb_Chr10g0096721 Lupinus albus HOM05D002440 ORTHO05D002576 2.4e-08 63.9 314 24.8
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 3.1e-08 63.5 301 26.6
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 4.1e-08 63.2 312 24.0
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 4.1e-08 63.2 287 23.3
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 4.1e-08 63.2 286 24.1
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 5.3e-08 62.8 248 23.8
Ca_23593_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 9.1e-08 62.0 329 25.2
Psat4g156680 Pisum sativum HOM05D002440 ORTHO05D002576 9.1e-08 62.0 333 23.4
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 1.2e-07 61.6 181 27.1
SGA_v2.0_scaffold43G16400 Striga asiatica HOM05D002440 ORTHO05D002576 1.2e-07 61.6 281 24.6
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 1.2e-07 61.6 288 22.9
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 1.5e-07 61.2 302 22.5
ClCG05G001350 Citrullus lanatus HOM05D002440 ORTHO05D002576 2.0e-07 60.8 276 25.7
Sed0005808 Sechium edule HOM05D002440 ORTHO05D002576 2.0e-07 60.8 301 25.6
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 2.0e-07 60.8 324 24.4
Ah.05g180270 Amaranthus hybridus HOM05D002440 ORTHO05D002576 2.6e-07 60.5 307 22.1
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 2.6e-07 60.5 307 24.4
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 3.4e-07 60.1 305 25.9
Nn1g01638 Nelumbo nucifera HOM05D002440 ORTHO05D002576 3.4e-07 60.1 313 23.6
RcHm_v2.0_Chr1g0357181 Rosa chinensis HOM05D002440 ORTHO05D002576 3.4e-07 60.1 307 23.5
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 4.5e-07 59.7 304 25.0
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 4.5e-07 59.7 295 23.1
HPP92_015002 Vanilla planifolia HOM05D002440 ORTHO05D002576 5.9e-07 59.3 226 27.4
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 7.7e-07 58.9 305 22.0
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 1.0e-06 58.5 98 31.6
SGA_v2.0_scaffold4G02292 Striga asiatica HOM05D000137 ORTHO05D002576 1.0e-06 58.5 326 23.6
Potri.014G088600 Populus trichocarpa HOM05D002440 ORTHO05D002576 1.3e-06 58.2 309 23.3
Gohir.D11G097700 Gossypium hirsutum HOM05D002440 ORTHO05D002576 1.7e-06 57.8 127 29.9
Glyma.18G237000 Glycine max HOM05D002440 ORTHO05D002576 2.9e-06 57.0 300 23.7
Lj7P509T23 Lonicera japonica HOM05D002440 ORTHO05D002576 2.9e-06 57.0 310 23.9
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 2.9e-06 57.0 304 24.3
Sed0022646 Sechium edule HOM05D002440 ORTHO05D002576 2.9e-06 57.0 290 23.1
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 3.8e-06 56.6 276 24.3
Gohir.A11G091300 Gossypium hirsutum HOM05D002440 ORTHO05D002576 3.8e-06 56.6 127 29.9
unitig_26.g9742 Utricularia gibba HOM05D002440 ORTHO05D002576 3.8e-06 56.6 310 23.2
Ca_00821_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 5.0e-06 56.2 304 24.0
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 5.0e-06 56.2 308 22.1
FAN01G0399 Fragaria x ananassa HOM05D002440 ORTHO05D002576 5.0e-06 56.2 307 23.8
Oeu036596.1 Olea europaea HOM05D002440 ORTHO05D002576 6.5e-06 55.8 287 24.4
QL04p054979 Quercus lobata HOM05D002440 ORTHO05D002576 6.5e-06 55.8 286 23.8
Glyma.09G255800 Glycine max HOM05D002440 ORTHO05D002576 8.5e-06 55.5 305 23.3
Nn6g33296 Nelumbo nucifera HOM05D002440 ORTHO05D002576 8.5e-06 55.5 295 22.4
VMungo1383G1374 Vigna mungo HOM05D002440 ORTHO05D002576 8.5e-06 55.5 303 23.1


User provided reference genes

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