Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14548 Trifolium pratense HOM05D000239 ORTHO05D029979 2.3e-63 245.4 118 100.0
TPR.G34720 Trifolium pratense HOM05D000239 ORTHO05D000484 2.3e-39 165.6 121 70.2
Medtr5g066490 Medicago truncatula HOM05D000239 ORTHO05D000484 1.2e-32 143.3 120 62.5
TPR.G19956 Trifolium pratense HOM05D000239 ORTHO05D029979 1.7e-31 139.4 72 91.7
Ca_05454_v3 Cicer arietinum L. HOM05D000239 ORTHO05D000484 2.8e-29 132.1 116 61.2
Psat2g065120 Pisum sativum HOM05D000239 ORTHO05D000484 6.2e-29 131.0 130 58.5
LjContig00408g0003194 Lotus japonicus HOM05D000239 ORTHO05D000484 1.0e-23 113.6 121 53.7
Lalb_Chr17g0344601 Lupinus albus HOM05D000239 ORTHO05D000484 3.6e-21 105.1 122 47.5
Glyma.14G182700 Glycine max HOM05D000239 ORTHO05D000484 5.4e-17 91.3 93 55.9
Lalb_Chr11g0064901 Lupinus albus HOM05D000239 ORTHO05D000484 7.1e-17 90.9 82 56.1
Medtr3g100090 Medicago truncatula HOM05D000239 ORTHO05D000484 9.3e-17 90.5 83 57.8
arahy.Tifrunner.gnm1.ann1.GSR2D3 Arachis hypogaea HOM05D000239 ORTHO05D000484 2.1e-16 89.4 114 43.0
Phvul.008G182800 Phaseolus vulgaris HOM05D000239 ORTHO05D000484 3.5e-16 88.6 98 50.0
VMungo1309G0456 Vigna mungo HOM05D000239 ORTHO05D000484 3.5e-16 88.6 84 56.0
VMungo0647G2348 Vigna mungo HOM05D000239 ORTHO05D000484 4.6e-16 88.2 98 53.1
Phvul.009G035800 Phaseolus vulgaris HOM05D000239 ORTHO05D000484 6.0e-16 87.8 84 54.8
Glyma.04G096000 Glycine max HOM05D000239 ORTHO05D000484 7.9e-16 87.4 50 78.0
Lj1g0017502 Lotus japonicus HOM05D000239 ORTHO05D000484 1.3e-15 86.7 62 64.5
Glyma.02G215300 Glycine max HOM05D000239 ORTHO05D000484 2.3e-15 85.9 98 50.0
arahy.Tifrunner.gnm1.ann1.LV620I Arachis hypogaea HOM05D000239 ORTHO05D000484 8.7e-15 84.0 49 75.5
arahy.Tifrunner.gnm1.ann1.UM7XUK Arachis hypogaea HOM05D000239 ORTHO05D000484 8.7e-15 84.0 49 75.5
CiPaw.08G056700 Carya illinoinensis HOM05D000239 ORTHO05D000484 1.1e-14 83.6 102 39.2
Potri.005G153100 Populus trichocarpa HOM05D000239 ORTHO05D000484 1.5e-14 83.2 66 59.1
Psat5g049400 Pisum sativum HOM05D000239 ORTHO05D000484 1.9e-14 82.8 47 78.7
Atru.chr13.995 Acer truncatum HOM05D000239 ORTHO05D000484 5.6e-14 81.3 70 60.0
Glyma.06G097700 Glycine max HOM05D000239 ORTHO05D000484 5.6e-14 81.3 59 67.8
TPR.G6368 Trifolium pratense HOM05D000239 ORTHO05D000484 5.6e-14 81.3 70 61.4
FAN08G2427 Fragaria x ananassa HOM05D000239 ORTHO05D000484 9.6e-14 80.5 83 51.8
TWI12G0368 Tripterygium wilfordii HOM05D000239 ORTHO05D000484 1.3e-13 80.1 96 45.8
CSS0024145 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.8e-13 79.0 89 48.3
Duzib093G1551 Durio zibethinus HOM05D000239 ORTHO05D000484 4.8e-13 78.2 49 69.4
Thecc.08G072500 Theobroma cacao HOM05D000239 ORTHO05D000484 4.8e-13 78.2 49 69.4
vmacro04644 Vaccinium macrocarpon HOM05D000239 ORTHO05D000484 4.8e-13 78.2 73 50.7
CANSAT25G1798 Cannabis sativa HOM05D000239 ORTHO05D000484 6.2e-13 77.8 80 50.0
COL.COLO4_35264 Corchorus olitorius HOM05D000239 ORTHO05D000484 8.1e-13 77.4 73 53.4
Gohir.A06G031600 Gossypium hirsutum HOM05D000239 ORTHO05D000484 8.1e-13 77.4 69 53.6
CiPaw.07G164100 Carya illinoinensis HOM05D000239 ORTHO05D000484 1.1e-12 77.0 77 49.4
Cfa013808 Carpinus fangiana HOM05D000239 ORTHO05D000484 1.4e-12 76.6 73 56.2
Haze_22474 Corylus avellana HOM05D000239 ORTHO05D000484 1.8e-12 76.3 54 63.0
Gohir.D06G030800 Gossypium hirsutum HOM05D000239 ORTHO05D000484 1.8e-12 76.3 54 59.3
PGR042G2622 Punica granatum HOM05D000239 ORTHO05D000484 1.8e-12 76.3 95 41.1
Rhsim07G0212700 Rhododendron simsii HOM05D000239 ORTHO05D000484 1.8e-12 76.3 69 52.2
TAR381G1717 Trochodendron aralioides HOM05D000239 ORTHO05D000484 1.8e-12 76.3 49 69.4
Aqoxy5G01368 Aquilegia oxysepala HOM05D000239 ORTHO05D000484 2.4e-12 75.9 83 47.0
Eucgr.F00429 Eucalyptus grandis HOM05D000239 ORTHO05D000484 2.4e-12 75.9 54 61.1
Duzib116G0174 Durio zibethinus HOM05D000239 ORTHO05D000484 3.1e-12 75.5 60 60.0
GSVIVG01009192001 Vitis vinifera HOM05D000239 ORTHO05D000484 3.1e-12 75.5 69 53.6
FvH4_5g34560 Fragaria vesca HOM05D000239 ORTHO05D000484 5.3e-12 74.7 84 50.0
FAN04G0539 Fragaria x ananassa HOM05D000239 ORTHO05D000484 5.3e-12 74.7 84 50.0
FAN13G2773 Fragaria x ananassa HOM05D000239 ORTHO05D000484 5.3e-12 74.7 84 50.0
FAN18G4405 Fragaria x ananassa HOM05D000239 ORTHO05D000484 5.3e-12 74.7 84 50.0
Gohir.D05G221600 Gossypium hirsutum HOM05D000239 ORTHO05D000484 5.3e-12 74.7 65 55.4
Gorai.009G228800 Gossypium raimondii HOM05D000239 ORTHO05D000484 5.3e-12 74.7 65 55.4
Manes.05G189700 Manihot esculenta HOM05D000239 ORTHO05D000484 5.3e-12 74.7 59 55.9
Manes.04G153000 Manihot esculenta HOM05D000239 ORTHO05D000484 6.9e-12 74.3 49 69.4
Potri.002G111200 Populus trichocarpa HOM05D000239 ORTHO05D000484 6.9e-12 74.3 48 64.6
MD15G1387500 Malus domestica HOM05D000239 ORTHO05D000484 9.0e-12 73.9 46 71.7
Sabra02G0087700 Salix brachista HOM05D000239 ORTHO05D000484 9.0e-12 73.9 48 64.6
Cpa.g.sc21.30 Carica papaya HOM05D000239 ORTHO05D000484 1.5e-11 73.2 58 55.2
Gorai.010G033900 Gossypium raimondii HOM05D000239 ORTHO05D000484 1.5e-11 73.2 69 50.7
MD08G1200300 Malus domestica HOM05D000239 ORTHO05D000484 2.0e-11 72.8 46 69.6
Manes.18G057444 Manihot esculenta HOM05D000239 ORTHO05D000484 2.0e-11 72.8 49 71.4
QL09p018020 Quercus lobata HOM05D000239 ORTHO05D000484 2.0e-11 72.8 68 50.0
Gohir.A05G218900 Gossypium hirsutum HOM05D000239 ORTHO05D000484 2.6e-11 72.4 65 53.8
CsaV3_3G048040 Cucumis sativus L. HOM05D000239 ORTHO05D000484 5.8e-11 71.2 46 67.4
PSO170G2643 Papaver somniferum HOM05D000239 ORTHO05D000484 7.6e-11 70.9 49 63.3
PSO210G6051 Papaver somniferum HOM05D000239 ORTHO05D000484 7.6e-11 70.9 49 63.3
Cc10_g08440 Coffea canephora HOM05D000239 ORTHO05D000484 9.9e-11 70.5 101 40.6
MELO3C003518.2 Cucumis melo HOM05D000239 ORTHO05D000484 9.9e-11 70.5 66 51.5
Hma1.2p1_0125F.1_g058760 Hydrangea macrophylla HOM05D000239 ORTHO05D000484 9.9e-11 70.5 73 53.4
Prupe.1G533900 Prunus persica HOM05D000239 ORTHO05D000484 1.3e-10 70.1 47 63.8
ClCG11G014630 Citrullus lanatus HOM05D000239 ORTHO05D000484 1.7e-10 69.7 69 50.7
Migut.N02856 Erythranthe guttata HOM05D000239 ORTHO05D000484 1.7e-10 69.7 70 45.7
Lsat_1_v5_gn_5_81300 Lactuca sativa HOM05D000239 ORTHO05D029979 1.7e-10 69.7 53 52.8
Lsat_1_v5_gn_6_113561 Lactuca sativa HOM05D000239 ORTHO05D000484 1.7e-10 69.7 53 52.8
Lsat_1_v5_gn_7_45441 Lactuca sativa HOM05D000239 ORTHO05D000484 1.7e-10 69.7 53 52.8
Lsat_1_v5_gn_8_108361 Lactuca sativa HOM05D000239 ORTHO05D029979 1.7e-10 69.7 53 52.8
MBI16_g31264_MAGBIO Magnolia biondii HOM05D000239 ORTHO05D000484 1.7e-10 69.7 54 57.4
HanXRQChr02g0046071 Helianthus annuus HOM05D000239 ORTHO05D000484 2.2e-10 69.3 46 58.7
Solyc04g076480.3 Solanum lycopersicum HOM05D000239 ORTHO05D000484 2.2e-10 69.3 69 46.4
Sopen00g007060 Solanum pennellii HOM05D000239 ORTHO05D000484 2.2e-10 69.3 69 46.4
Oeu028592.3 Olea europaea HOM05D000239 ORTHO05D000484 2.9e-10 68.9 41 70.7
TWI36G0412 Tripterygium wilfordii HOM05D000239 ORTHO05D000484 2.9e-10 68.9 69 53.6
ECA247G0424 Erigeron canadensis HOM05D000239 ORTHO05D000484 3.8e-10 68.6 53 52.8
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.8e-10 68.6 57 49.1
Peaxi162Scf00454g00111 Petunia axillaris HOM05D000239 ORTHO05D000484 3.8e-10 68.6 69 43.5
RcHm_v2.0_Chr7g0235241 Rosa chinensis HOM05D000239 ORTHO05D000484 3.8e-10 68.6 99 40.4
Ciclev10000192m.g Citrus clementina HOM05D000239 ORTHO05D000484 4.9e-10 68.2 49 59.2
DCAR_020025 Daucus carota HOM05D000239 ORTHO05D000484 6.4e-10 67.8 49 59.2
Nitab4.5_0011537g0020 Nicotiana tabacum HOM05D000239 ORTHO05D000484 8.4e-10 67.4 57 47.4
TAR628G1489 Trochodendron aralioides HOM05D000239 ORTHO05D000484 8.4e-10 67.4 69 49.3
Lj4C87T5 Lonicera japonica HOM05D000239 ORTHO05D000484 1.9e-09 66.2 50 58.0
Sed0018934 Sechium edule HOM05D000239 ORTHO05D000484 1.9e-09 66.2 73 46.6
Sc02g0004940 Simmondsia chinensis HOM05D000239 ORTHO05D000484 2.4e-09 65.9 44 63.6
PGSC0003DMG400009337 Solanum tuberosum HOM05D000239 ORTHO05D000484 2.4e-09 65.9 69 43.5
MSTRG.24426 Avicennia marina HOM05D000239 ORTHO05D000484 3.2e-09 65.5 41 63.4
CAN.G475.9 Capsicum annuum HOM05D000239 ORTHO05D000484 3.2e-09 65.5 69 47.8
Nn1g05599 Nelumbo nucifera HOM05D000239 ORTHO05D000484 1.2e-08 63.5 35 77.1
SalBow2G0385 Salvia bowleyana HOM05D000239 ORTHO05D000484 1.6e-08 63.2 41 63.4
Nn5g29855 Nelumbo nucifera HOM05D000239 ORTHO05D000484 2.1e-08 62.8 35 77.1
Hund26818 Selenicereus undatus HOM05D000239 ORTHO05D000484 2.7e-08 62.4 107 29.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 6.0e-08 61.2 70 44.3
EL10Ac1g00503 Beta vulgaris HOM05D000239 ORTHO05D000484 1.3e-07 60.1 100 35.0
Ah.05g171380 Amaranthus hybridus HOM05D000239 ORTHO05D000484 1.8e-07 59.7 53 49.1
SGA_v2.0_scaffold48G17840 Striga asiatica HOM05D000239 ORTHO05D000484 1.8e-07 59.7 69 43.5
MSTRG.22179 Avicennia marina HOM05D000239 ORTHO05D000484 2.3e-07 59.3 69 46.4
AL7G28740 Arabidopsis lyrata HOM05D000239 ORTHO05D000484 3.0e-07 58.9 39 64.1
AT4G24480 Arabidopsis thaliana HOM05D000239 ORTHO05D000484 3.0e-07 58.9 39 64.1
Aa31LG4G9580 Aethionema arabicum HOM05D000239 ORTHO05D000484 3.9e-07 58.5 39 61.5
THA.LOC104804715 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 3.9e-07 58.5 47 55.3
THA.LOC104799785 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 5.1e-07 58.2 39 61.5
AUR62019099 Chenopodium quinoa HOM05D000239 ORTHO05D000484 8.7e-07 57.4 49 49.0
Sp7g22470 Schrenkiella parvula HOM05D000239 ORTHO05D000484 8.7e-07 57.4 39 59.0
A01p15850 Brassica napus HOM05D000239 ORTHO05D000484 1.9e-06 56.2 62 43.5
BraA01t01519Z Brassica rapa HOM05D000239 ORTHO05D000484 1.9e-06 56.2 62 43.5
AUR62014357 Chenopodium quinoa HOM05D000239 ORTHO05D000484 1.9e-06 56.2 41 56.1
BcaC09g50864 Brassica carinata HOM05D000239 ORTHO05D000484 2.5e-06 55.8 62 43.5
C01p19790 Brassica napus HOM05D000239 ORTHO05D000484 2.5e-06 55.8 62 43.5
BolC1t01907H Brassica oleracea HOM05D000239 ORTHO05D000484 2.5e-06 55.8 62 43.5
Carub.0007s1659 Capsella rubella HOM05D000239 ORTHO05D000484 2.5e-06 55.8 39 56.4
Os04g0610900 Oryza sativa ssp. japonica HOM05D000239 ORTHO05D000484 2.5e-06 55.8 85 41.2
CARHR231870 Cardamine hirsuta HOM05D000239 ORTHO05D000484 4.3e-06 55.1 36 63.9
Thhalv10024333m.g Eutrema salsugineum HOM05D000239 ORTHO05D000484 7.4e-06 54.3 38 57.9
HPP92_013161 Vanilla planifolia HOM05D000239 ORTHO05D000484 9.6e-06 53.9 49 46.9
HPP92_013195 Vanilla planifolia HOM05D000239 ORTHO05D016655 9.6e-06 53.9 49 46.9
Zm00001eb071130 Zea mays HOM05D000239 ORTHO05D000484 9.6e-06 53.9 71 45.1


User provided reference genes

Program Settings