Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g051895 Medicago truncatula HOM05D002157 ORTHO05D002197 1.3e-11 71.6 35 100.0
TPR.G14546 Trifolium pratense HOM05D002157 ORTHO05D002197 1.3e-11 71.6 35 100.0
Ca_12261_v3 Cicer arietinum L. HOM05D002157 ORTHO05D002197 2.9e-11 70.5 35 97.1
VMungo0720G1144 Vigna mungo HOM05D002157 ORTHO05D002197 6.6e-11 69.3 35 97.1
Lalb_Chr06g0173511 Lupinus albus HOM05D002157 ORTHO05D002197 8.6e-11 68.9 35 94.3
Phvul.007G250200 Phaseolus vulgaris HOM05D002157 ORTHO05D002197 8.6e-11 68.9 35 94.3
Lj5g0017397 Lotus japonicus HOM05D002157 ORTHO05D002197 1.5e-10 68.2 35 94.3
ECA248G0923 Erigeron canadensis HOM05D002157 ORTHO05D002197 4.3e-10 66.6 35 91.4
ECA248G3640 Erigeron canadensis HOM05D002157 ORTHO05D002197 4.3e-10 66.6 35 91.4
Nitab4.5_0000677g0130 Nicotiana tabacum HOM05D002157 ORTHO05D002197 4.3e-10 66.6 35 91.4
Nitab4.5_0001319g0030 Nicotiana tabacum HOM05D002157 ORTHO05D002197 4.3e-10 66.6 35 91.4
MSTRG.6408 Avicennia marina HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BcaB01g05773 Brassica carinata HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BcaB01g05887 Brassica carinata HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BcaC06g32119 Brassica carinata HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BcaC06g32120 Brassica carinata HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
A03p01570 Brassica napus HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
A10p31970 Brassica napus HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
C03p01910 Brassica napus HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
C09p72680 Brassica napus HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BolC3t12745H Brassica oleracea HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BolC9t60008H Brassica oleracea HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
BraA03t09532Z Brassica rapa HOM05D002157 ORTHO05D002197 5.6e-10 66.2 35 88.6
Thhalv10013932m.g Eutrema salsugineum HOM05D002157 ORTHO05D002197 7.3e-10 65.9 35 88.6
Hma1.2p1_0110F.1_g052890 Hydrangea macrophylla HOM05D002157 ORTHO05D002197 7.3e-10 65.9 35 88.6
PSO339G4678 Papaver somniferum HOM05D002157 ORTHO05D002197 7.3e-10 65.9 35 91.4
PSO384G4974 Papaver somniferum HOM05D002157 ORTHO05D002197 7.3e-10 65.9 35 91.4
CANSAT80G1209 Cannabis sativa HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 91.4
ClCG04G003720 Citrullus lanatus HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 91.4
MELO3C026331.2 Cucumis melo HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 91.4
CsaV3_4G027710 Cucumis sativus L. HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 91.4
Glyma.10G106400 Glycine max HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 88.6
HanXRQChr13g0395961 Helianthus annuus HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 88.6
Lsat_1_v5_gn_5_160840 Lactuca sativa HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 88.6
Sed0003766 Sechium edule HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 91.4
Sed0023281 Sechium edule HOM05D002157 ORTHO05D002197 9.5e-10 65.5 35 91.4
BraA10t45241Z Brassica rapa HOM05D002157 ORTHO05D002197 1.2e-09 65.1 35 88.6
CAN.G1656.3 Capsicum annuum HOM05D002157 ORTHO05D002197 1.2e-09 65.1 35 88.6
THA.LOC104827451 Tarenaya hassleriana HOM05D002157 ORTHO05D002197 1.2e-09 65.1 35 88.6
TWI74G1385 Tripterygium wilfordii HOM05D002157 ORTHO05D002197 1.2e-09 65.1 35 88.6
Zm00001eb196390 Zea mays HOM05D002157 ORTHO05D002197 1.2e-09 65.1 35 88.6
Aqoxy2G00240 Aquilegia oxysepala HOM05D002157 ORTHO05D002197 1.6e-09 64.7 35 85.7
Carub.0006s0312 Capsella rubella HOM05D002157 ORTHO05D002197 1.6e-09 64.7 35 88.6
DCAR_016973 Daucus carota HOM05D002157 ORTHO05D002197 1.6e-09 64.7 35 88.6
THA.LOC104816674 Tarenaya hassleriana HOM05D002157 ORTHO05D002197 1.6e-09 64.7 35 85.7
Cfa016777 Carpinus fangiana HOM05D002157 ORTHO05D002197 2.1e-09 64.3 35 85.7
DCAR_013614 Daucus carota HOM05D002157 ORTHO05D002197 2.1e-09 64.3 35 88.6
Actinidia39200 Actinidia chinensis HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Aa31LG1G21170 Aethionema arabicum HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
AL6G13790 Arabidopsis lyrata HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
AT5G04170 Arabidopsis thaliana HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Cpa.g.sc182.19 Carica papaya HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Cc06_g18120 Coffea canephora HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Duzib106G1489 Durio zibethinus HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 88.6
Oeu006917.1 Olea europaea HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Oeu033021.2 Olea europaea HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Peaxi162Scf00069g00117 Petunia axillaris HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Solyc10g079890.2 Solanum lycopersicum HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Sopen10g030500 Solanum pennellii HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
PGSC0003DMG400029828 Solanum tuberosum HOM05D002157 ORTHO05D002197 2.8e-09 63.9 35 85.7
Aa31LG3G2880 Aethionema arabicum HOM05D002157 ORTHO05D002197 3.6e-09 63.5 35 85.7
CARHR209090 Cardamine hirsuta HOM05D002157 ORTHO05D002197 3.6e-09 63.5 35 85.7
Os11g0140600 Oryza sativa ssp. japonica HOM05D002157 ORTHO05D002197 3.6e-09 63.5 35 85.7
Os12g0137100 Oryza sativa ssp. japonica HOM05D002157 ORTHO05D002197 3.6e-09 63.5 35 85.7
CSS0024302 Camellia sinensis var. sinensis HOM05D002157 ORTHO05D002197 4.7e-09 63.2 35 85.7
Lj1A1125T62 Lonicera japonica HOM05D002157 ORTHO05D002197 4.7e-09 63.2 35 85.7
SGA_v2.0_scaffold105G30372 Striga asiatica HOM05D002157 ORTHO05D002197 4.7e-09 63.2 35 88.6
vmacro09051 Vaccinium macrocarpon HOM05D002157 ORTHO05D002197 4.7e-09 63.2 35 85.7
Duzib093G1258 Durio zibethinus HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
Duzib128G0862 Durio zibethinus HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
Eucgr.K02020 Eucalyptus grandis HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 82.9
Gohir.D03G069703 Gossypium hirsutum HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
Gorai.003G090700 Gossypium raimondii HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
Lj2C387T4 Lonicera japonica HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 82.9
Manes.09G017900 Manihot esculenta HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
Peaxi162Scf00130g00831 Petunia axillaris HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 82.9
Rhsim04G0106500 Rhododendron simsii HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
TAR633G0826 Trochodendron aralioides HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 88.6
vmacro21966 Vaccinium macrocarpon HOM05D002157 ORTHO05D002197 6.1e-09 62.8 35 85.7
Actinidia38131 Actinidia chinensis HOM05D002157 ORTHO05D002197 8.0e-09 62.4 35 85.7
HPP92_018216 Vanilla planifolia HOM05D002157 ORTHO05D002197 8.0e-09 62.4 35 82.9
HPP92_027971 Vanilla planifolia HOM05D002157 ORTHO05D002197 8.0e-09 62.4 35 82.9
Haze_19787 Corylus avellana HOM05D002157 ORTHO05D002197 1.0e-08 62.0 35 82.9
Haze_19789 Corylus avellana HOM05D002157 ORTHO05D002197 1.0e-08 62.0 35 82.9
Thecc.05G147800 Theobroma cacao HOM05D002157 ORTHO05D002197 1.0e-08 62.0 35 82.9
BcaB04g21218 Brassica carinata HOM05D002157 ORTHO05D002197 1.4e-08 61.6 35 82.9
BcaC09g48103 Brassica carinata HOM05D002157 ORTHO05D002197 1.4e-08 61.6 35 82.9
A01p41920 Brassica napus HOM05D002157 ORTHO05D002197 1.4e-08 61.6 35 82.9
BolC1t05408H Brassica oleracea HOM05D002157 ORTHO05D002197 1.4e-08 61.6 35 82.9
BraA01t04261Z Brassica rapa HOM05D002157 ORTHO05D002197 1.4e-08 61.6 35 82.9
Potri.006G047300 Populus trichocarpa HOM05D002157 ORTHO05D002197 1.4e-08 61.6 35 82.9
Eucgr.A02309 Eucalyptus grandis HOM05D002157 ORTHO05D002197 1.8e-08 61.2 35 82.9
Sabra06G0033000 Salix brachista HOM05D002157 ORTHO05D002197 1.8e-08 61.2 35 80.0
Atru.chr1.1222 Acer truncatum HOM05D002157 ORTHO05D002197 2.3e-08 60.8 35 82.9
Gohir.A02G107200 Gossypium hirsutum HOM05D002157 ORTHO05D002197 2.3e-08 60.8 35 82.9
Manes.09G018001 Manihot esculenta HOM05D002157 ORTHO05D002197 2.3e-08 60.8 33 84.8
PGR004G1005 Punica granatum HOM05D002157 ORTHO05D002197 2.3e-08 60.8 35 82.9
GSVIVG01005051001 Vitis vinifera HOM05D002157 ORTHO05D002197 2.3e-08 60.8 35 82.9
Ah.04g151430 Amaranthus hybridus HOM05D002157 ORTHO05D002197 3.1e-08 60.5 35 82.9
CiPaw.09G040500 Carya illinoinensis HOM05D002157 ORTHO05D002197 3.1e-08 60.5 35 80.0
Oeu042058.1 Olea europaea HOM05D002157 ORTHO05D002197 3.1e-08 60.5 35 80.0
Prupe.7G053100 Prunus persica HOM05D002157 ORTHO05D002197 3.1e-08 60.5 35 82.9
Carub.0003s0948 Capsella rubella HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 80.0
CiPaw.10G035600 Carya illinoinensis HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 80.0
AUR62024513 Chenopodium quinoa HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 80.0
AUR62026104 Chenopodium quinoa HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 80.0
COL.COLO4_29950 Corchorus olitorius HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 80.0
Thhalv10021208m.g Eutrema salsugineum HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 80.0
PGSC0003DMG400012715 Solanum tuberosum HOM05D002157 ORTHO05D002197 4.0e-08 60.1 35 77.1
Cpa.g.sc182.17 Carica papaya HOM05D002157 ORTHO05D002197 5.2e-08 59.7 35 80.0
EL10Ac3g07140 Beta vulgaris HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 80.0
CARHR084770 Cardamine hirsuta HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 80.0
ECA236G0949 Erigeron canadensis HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 80.0
FvH4_6g24530 Fragaria vesca HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 82.9
FAN02G3716 Fragaria x ananassa HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 82.9
FAN05G0994 Fragaria x ananassa HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 82.9
FAN09G0438 Fragaria x ananassa HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 82.9
FAN14G1619 Fragaria x ananassa HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 82.9
Sp3g08560 Schrenkiella parvula HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 80.0
Sopen04g008490 Solanum pennellii HOM05D002157 ORTHO05D002197 6.8e-08 59.3 35 77.1
CDE02G2071 Ceratophyllum demersum HOM05D002157 ORTHO05D002197 8.9e-08 58.9 35 77.1
Migut.J01721 Erythranthe guttata HOM05D002157 ORTHO05D002197 8.9e-08 58.9 35 80.0
Glyma.12G185400 Glycine max HOM05D002157 ORTHO05D002197 8.9e-08 58.9 34 79.4
Glyma.13G316100 Glycine max HOM05D002157 ORTHO05D002197 8.9e-08 58.9 34 79.4
HanXRQChr01g0009091 Helianthus annuus HOM05D002157 ORTHO05D002197 8.9e-08 58.9 35 80.0
MD12G1082900 Malus domestica HOM05D002157 ORTHO05D002197 8.9e-08 58.9 35 80.0
MD14G1061500 Malus domestica HOM05D002157 ORTHO05D002197 8.9e-08 58.9 35 80.0
Phvul.005G123400 Phaseolus vulgaris HOM05D002157 ORTHO05D002197 8.9e-08 58.9 34 79.4
RcHm_v2.0_Chr3g0483641 Rosa chinensis HOM05D002157 ORTHO05D002197 8.9e-08 58.9 35 82.9
arahy.Tifrunner.gnm1.ann1.UUK80H Arachis hypogaea HOM05D002157 ORTHO05D002197 1.2e-07 58.5 35 77.1
Eucgr.I02595 Eucalyptus grandis HOM05D002157 ORTHO05D002197 1.2e-07 58.5 35 80.0
unitig_26.g9056 Utricularia gibba HOM05D002157 ORTHO05D002197 1.2e-07 58.5 35 74.3
AL3G21630 Arabidopsis lyrata HOM05D002157 ORTHO05D002197 1.5e-07 58.2 35 80.0
MD14G1077400 Malus domestica HOM05D002157 ORTHO05D002197 1.5e-07 58.2 35 80.0
Potri.016G043600 Populus trichocarpa HOM05D002157 ORTHO05D002197 1.5e-07 58.2 35 77.1
Lj3g0017978 Lotus japonicus HOM05D002157 ORTHO05D002197 2.0e-07 57.8 34 76.5
MD14G1077700 Malus domestica HOM05D002157 ORTHO05D002197 2.0e-07 57.8 35 77.1
Aqoxy2G00247 Aquilegia oxysepala HOM05D002157 ORTHO05D002197 2.6e-07 57.4 35 74.3
Nn2g15122 Nelumbo nucifera HOM05D002157 ORTHO05D002197 2.6e-07 57.4 35 77.1
AT3G10300 Arabidopsis thaliana HOM05D002157 ORTHO05D002197 3.4e-07 57.0 35 77.1
Sc13g0001580 Simmondsia chinensis HOM05D002157 ORTHO05D002197 3.4e-07 57.0 35 77.1
SalBow6G1140 Salvia bowleyana HOM05D002157 ORTHO05D002197 4.4e-07 56.6 33 75.8
VMungo1080G1729 Vigna mungo HOM05D002157 ORTHO05D002197 4.4e-07 56.6 34 76.5
SalBow6G1686 Salvia bowleyana HOM05D002157 ORTHO05D002197 5.8e-07 56.2 34 73.5
TAR623G0318 Trochodendron aralioides HOM05D002157 ORTHO05D002197 5.8e-07 56.2 35 80.0
Atru.chr1.1220 Acer truncatum HOM05D002157 ORTHO05D002197 7.5e-07 55.8 31 77.4
ECA233G3920 Erigeron canadensis HOM05D002157 ORTHO05D002197 7.5e-07 55.8 34 76.5
Gohir.D08G015600 Gossypium hirsutum HOM05D002157 ORTHO05D002197 7.5e-07 55.8 34 70.6
Gorai.004G009900 Gossypium raimondii HOM05D002157 ORTHO05D002197 7.5e-07 55.8 34 70.6
HanXRQChr16g0526971 Helianthus annuus HOM05D002157 ORTHO05D002197 7.5e-07 55.8 34 76.5
FvH4_3g24940 Fragaria vesca HOM05D002157 ORTHO05D002197 9.8e-07 55.5 34 73.5
FAN11G0407 Fragaria x ananassa HOM05D002157 ORTHO05D002197 9.8e-07 55.5 34 73.5
FAN16G3172 Fragaria x ananassa HOM05D002157 ORTHO05D002197 9.8e-07 55.5 34 73.5
FAN21G0078 Fragaria x ananassa HOM05D002157 ORTHO05D002197 9.8e-07 55.5 34 73.5
FAN25G2309 Fragaria x ananassa HOM05D002157 ORTHO05D002197 9.8e-07 55.5 34 73.5
RcHm_v2.0_Chr5g0044731 Rosa chinensis HOM05D002157 ORTHO05D002197 9.8e-07 55.5 34 73.5
MELO3C004702.2 Cucumis melo HOM05D002157 ORTHO05D002197 1.3e-06 55.1 34 70.6
CsaV3_1G014860 Cucumis sativus L. HOM05D002157 ORTHO05D002197 1.3e-06 55.1 34 70.6
Sabra16G0048400 Salix brachista HOM05D002157 ORTHO05D002197 1.3e-06 55.1 35 74.3
Aa31LG5G8820 Aethionema arabicum HOM05D002157 ORTHO05D002197 1.7e-06 54.7 34 67.6
MSTRG.19837 Avicennia marina HOM05D002157 ORTHO05D002197 1.7e-06 54.7 35 71.4
MD14G1077800 Malus domestica HOM05D002157 ORTHO05D002197 1.7e-06 54.7 35 74.3
Nn7g36406 Nelumbo nucifera HOM05D002157 ORTHO05D002197 1.7e-06 54.7 35 71.4
Sed0023645 Sechium edule HOM05D002157 ORTHO05D002197 1.7e-06 54.7 34 73.5
DCAR_020511 Daucus carota HOM05D002157 ORTHO05D002197 2.2e-06 54.3 35 77.1
Gohir.A08G005200 Gossypium hirsutum HOM05D002157 ORTHO05D002197 2.2e-06 54.3 34 67.6
Nn7g36411 Nelumbo nucifera HOM05D002157 ORTHO05D002197 2.2e-06 54.3 35 71.4
Hund18758 Selenicereus undatus HOM05D002157 ORTHO05D002197 2.2e-06 54.3 33 75.8
TWI79G1181 Tripterygium wilfordii HOM05D002157 ORTHO05D002197 2.9e-06 53.9 34 70.6
ClCG01G012200 Citrullus lanatus HOM05D002157 ORTHO05D002197 3.7e-06 53.5 34 67.6
Migut.O00786 Erythranthe guttata HOM05D002157 ORTHO05D002197 3.7e-06 53.5 34 67.6
PSO339G1345 Papaver somniferum HOM05D002157 ORTHO05D002197 3.7e-06 53.5 34 67.6
PSO384G0981 Papaver somniferum HOM05D002157 ORTHO05D002197 3.7e-06 53.5 34 67.6
Hund19131 Selenicereus undatus HOM05D002157 ORTHO05D002197 3.7e-06 53.5 35 74.3
Cfa010013 Carpinus fangiana HOM05D002157 ORTHO05D002197 4.9e-06 53.1 33 69.7
HanXRQChr13g0397061 Helianthus annuus HOM05D002157 ORTHO05D002197 4.9e-06 53.1 35 71.4
MD00G1075300 Malus domestica HOM05D002157 ORTHO05D002197 4.9e-06 53.1 34 67.6
Potri.004G202200 Populus trichocarpa HOM05D002157 ORTHO05D002197 4.9e-06 53.1 34 64.7
SMO174G0122 Selaginella moellendorffii HOM05D002157 ORTHO05D002197 4.9e-06 53.1 32 78.1
CDE04G1819 Ceratophyllum demersum HOM05D002157 ORTHO05D002197 6.4e-06 52.8 35 71.4
AUR62009753 Chenopodium quinoa HOM05D002157 ORTHO05D002197 6.4e-06 52.8 33 66.7
Sc12g0004530 Simmondsia chinensis HOM05D002157 ORTHO05D002197 6.4e-06 52.8 33 72.7
GSVIVG01036121001 Vitis vinifera HOM05D002157 ORTHO05D002197 6.4e-06 52.8 35 65.7
MSTRG.18758 Avicennia marina HOM05D002157 ORTHO05D002197 8.3e-06 52.4 34 64.7
Duzib170G0387 Durio zibethinus HOM05D002157 ORTHO05D002197 8.3e-06 52.4 34 67.6
Rhsim13G0112000 Rhododendron simsii HOM05D002157 ORTHO05D002197 8.3e-06 52.4 35 65.7
SGA_v2.0_scaffold22G09863 Striga asiatica HOM05D002157 ORTHO05D002197 8.3e-06 52.4 34 64.7


User provided reference genes

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