Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14489 Trifolium pratense HOM05D003525 ORTHO05D004578 3.7e-117 424.9 211 100.0
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.8e-31 140.2 296 37.2
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 3.1e-31 139.4 296 37.2
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 2.2e-29 133.3 327 33.6
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 5.0e-29 132.1 321 34.3
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 5.0e-29 132.1 321 34.3
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 8.5e-29 131.3 323 33.7
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 1.1e-28 131.0 327 33.6
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 2.5e-28 129.8 324 33.6
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 3.2e-28 129.4 329 33.4
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 9.4e-28 127.9 279 33.7
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 1.2e-27 127.5 295 32.9
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 2.1e-27 126.7 332 33.1
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 2.7e-27 126.3 327 32.4
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 3.6e-27 125.9 70 85.7
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 4.7e-27 125.6 332 32.5
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 6.1e-27 125.2 80 78.8
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 6.1e-27 125.2 70 91.4
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 7.9e-27 124.8 70 85.7
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 7.9e-27 124.8 70 84.3
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 1.4e-26 124.0 80 77.5
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.4e-26 124.0 80 77.5
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.4e-26 124.0 80 77.5
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 1.4e-26 124.0 70 85.7
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 1.8e-26 123.6 80 77.5
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 2.3e-26 123.2 70 85.7
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 2.3e-26 123.2 70 85.7
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 3.0e-26 122.9 70 85.7
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 3.0e-26 122.9 70 85.7
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 3.0e-26 122.9 70 85.7
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 3.0e-26 122.9 80 76.2
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 3.0e-26 122.9 312 32.1
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 3.0e-26 122.9 80 77.5
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 3.0e-26 122.9 70 85.7
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 5.1e-26 122.1 336 32.1
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 5.1e-26 122.1 70 81.4
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 6.7e-26 121.7 70 82.9
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 8.8e-26 121.3 302 31.8
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 8.8e-26 121.3 302 32.5
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 8.8e-26 121.3 70 84.3
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 1.1e-25 120.9 80 75.0
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 1.1e-25 120.9 80 75.0
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 1.1e-25 120.9 333 31.5
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.5e-25 120.6 80 73.8
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 1.5e-25 120.6 70 82.9
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.5e-25 120.6 80 73.8
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.0e-25 120.2 335 30.7
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 2.0e-25 120.2 80 75.0
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 2.0e-25 120.2 72 77.8
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 2.0e-25 120.2 70 81.4
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 2.6e-25 119.8 80 75.0
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 2.6e-25 119.8 70 82.9
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 2.6e-25 119.8 70 84.3
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 82.9
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 81.4
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 82.9
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 82.9
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 82.9
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 81.4
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 3.3e-25 119.4 70 82.9
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 5.7e-25 118.6 70 80.0
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 7.4e-25 118.2 80 72.5
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 7.4e-25 118.2 70 78.6
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 7.4e-25 118.2 70 80.0
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 7.4e-25 118.2 80 72.5
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 9.7e-25 117.9 70 78.6
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 9.7e-25 117.9 315 32.1
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 9.7e-25 117.9 70 78.6
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 9.7e-25 117.9 70 78.6
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 1.3e-24 117.5 80 72.5
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 1.3e-24 117.5 70 80.0
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 1.3e-24 117.5 70 78.6
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 1.3e-24 117.5 70 80.0
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 1.3e-24 117.5 70 78.6
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 1.7e-24 117.1 70 80.0
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.7e-24 117.1 80 71.2
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 1.7e-24 117.1 331 30.8
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 2.2e-24 116.7 70 80.0
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 2.2e-24 116.7 70 80.0
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 2.2e-24 116.7 80 73.8
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 2.2e-24 116.7 70 78.6
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 2.2e-24 116.7 70 77.1
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 2.2e-24 116.7 70 77.1
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 2.8e-24 116.3 70 77.1
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 2.8e-24 116.3 70 78.6
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 2.8e-24 116.3 70 80.0
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 3.7e-24 115.9 70 78.6
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 4.8e-24 115.5 70 78.6
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 4.8e-24 115.5 70 80.0
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 4.8e-24 115.5 70 78.6
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 4.8e-24 115.5 80 70.0
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 4.8e-24 115.5 70 77.1
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 4.8e-24 115.5 70 77.1
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 6.3e-24 115.2 70 78.6
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 6.3e-24 115.2 80 71.2
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 8.2e-24 114.8 70 77.1
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 8.2e-24 114.8 70 77.1
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 8.2e-24 114.8 70 77.1
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 1.1e-23 114.4 70 77.1
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 1.1e-23 114.4 70 77.1
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 1.4e-23 114.0 80 71.2
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.4e-23 114.0 70 75.7
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 1.8e-23 113.6 70 75.7
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 1.8e-23 113.6 70 75.7
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 1.8e-23 113.6 70 77.1
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 1.8e-23 113.6 70 77.1
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 2.4e-23 113.2 70 75.7
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 2.4e-23 113.2 70 75.7
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 2.4e-23 113.2 70 75.7
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 3.1e-23 112.8 70 74.3
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 3.1e-23 112.8 69 76.8
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 3.1e-23 112.8 80 67.5
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 4.1e-23 112.5 70 77.1
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 4.1e-23 112.5 70 75.7
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 5.3e-23 112.1 80 67.5
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 7.0e-23 111.7 70 75.7
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 7.0e-23 111.7 70 72.9
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 7.0e-23 111.7 80 68.8
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 7.0e-23 111.7 80 68.8
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 9.1e-23 111.3 70 75.7
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 1.2e-22 110.9 70 72.9
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 1.2e-22 110.9 66 77.3
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 1.5e-22 110.5 80 71.2
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 1.5e-22 110.5 70 75.7
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 1.5e-22 110.5 70 72.9
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 2.6e-22 109.8 70 72.9
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 2.6e-22 109.8 70 72.9
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 2.6e-22 109.8 70 68.6
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 3.5e-22 109.4 69 78.3
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 4.5e-22 109.0 69 75.4
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 4.5e-22 109.0 322 29.2
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 4.5e-22 109.0 70 72.9
MELO3C019736.2 Cucumis melo HOM05D003525 ORTHO05D004578 5.9e-22 108.6 70 74.3
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 5.9e-22 108.6 70 71.4
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 7.7e-22 108.2 70 71.4
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 7.7e-22 108.2 72 69.4
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 1.3e-21 107.5 70 70.0
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 1.3e-21 107.5 70 71.4
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 1.3e-21 107.5 70 71.4
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 1.7e-21 107.1 70 72.9
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.7e-21 107.1 70 72.9
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.8e-21 105.9 80 66.2
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.8e-21 105.9 80 66.2
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 3.8e-21 105.9 80 66.2
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 3.8e-21 105.9 70 71.4
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 5.0e-21 105.5 68 69.1
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 8.5e-21 104.8 70 70.0
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 1.5e-20 104.0 77 62.3
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 7.2e-20 101.7 85 57.6
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 2.1e-19 100.1 70 68.6
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 8.0e-19 98.2 239 35.1
HPP92_017436 Vanilla planifolia HOM05D000653 ORTHO05D002177 1.4e-18 97.4 69 68.1
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 2.3e-18 96.7 70 67.1
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 3.0e-18 96.3 57 78.9
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 8.8e-18 94.7 82 56.1
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 2.6e-17 93.2 91 51.6
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 2.6e-17 93.2 72 65.3
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis HOM05D003525 ORTHO05D004578 3.3e-17 92.8 85 52.9
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 2.2e-16 90.1 70 64.3
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 2.8e-16 89.7 72 55.6
ECA234G4333 Erigeron canadensis HOM05D003525 ORTHO05D004578 1.8e-15 87.0 80 53.8
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 2.5e-12 76.6 70 47.1
Actinidia27898 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.6e-11 73.9 59 66.1
MCO10G181 Micromonas commoda HOM05D003525 ORTHO05D004578 6.1e-11 72.0 72 41.7
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 8.0e-11 71.6 59 64.4
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 1.4e-10 70.9 97 42.3
Cre06.g304100 Chlamydomonas reinhardtii HOM05D003525 ORTHO05D004578 1.3e-08 64.3 74 41.9
Atru.chr7.1490 Acer truncatum HOM05D003525 ORTHO05D037886 6.3e-08 62.0 45 71.1
Nn2g12770 Nelumbo nucifera HOM05D003525 ORTHO05D019487 6.3e-08 62.0 53 60.4


User provided reference genes

Program Settings