Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 9.8e-46 186.4 93 100.0
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 1.5e-41 172.6 94 93.6
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 1.9e-41 172.2 93 92.5
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 4.7e-40 167.5 94 90.4
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 4.7e-40 167.5 94 90.4
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 1.0e-39 166.4 94 91.5
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 1.0e-39 166.4 94 90.4
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 6.8e-39 163.7 94 88.3
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 1.2e-38 162.9 94 86.2
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 1.5e-38 162.5 94 87.2
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 2.6e-38 161.8 94 87.2
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 2.6e-38 161.8 94 87.2
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 5.8e-38 160.6 94 86.2
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 1.3e-37 159.5 95 87.4
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.3e-37 159.5 94 84.0
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 1.3e-37 159.5 94 85.1
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 1.7e-37 159.1 94 84.0
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.7e-37 159.1 94 87.2
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 84.9
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 84.9
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 84.9
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 84.9
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 84.9
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 3.7e-37 157.9 94 83.0
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 1.9e-36 155.6 94 84.0
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 1.9e-36 155.6 94 84.0
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.9e-36 155.6 94 81.9
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.4e-36 155.2 94 81.9
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 3.2e-36 154.8 94 83.0
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 3.2e-36 154.8 94 83.0
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 3.2e-36 154.8 94 83.0
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 3.2e-36 154.8 94 81.9
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 3.2e-36 154.8 94 81.9
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 4.1e-36 154.5 94 83.0
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 4.1e-36 154.5 94 83.0
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 4.1e-36 154.5 94 83.0
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 4.1e-36 154.5 94 80.9
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 81.9
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 81.9
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 80.9
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 9.2e-36 153.3 94 81.9
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 9.2e-36 153.3 94 81.9
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 9.2e-36 153.3 94 83.0
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 9.2e-36 153.3 94 80.9
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 1.2e-35 152.9 94 81.9
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 1.6e-35 152.5 94 83.0
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 2.0e-35 152.1 94 80.9
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 2.0e-35 152.1 94 80.9
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 2.0e-35 152.1 94 80.9
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 2.0e-35 152.1 94 80.9
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 80.9
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 81.9
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 81.9
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 3.5e-35 151.4 94 80.9
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 4.6e-35 151.0 94 79.8
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 6.0e-35 150.6 94 81.9
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 6.0e-35 150.6 94 81.9
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 80.9
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 79.8
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 80.9
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 80.9
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 80.9
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 79.8
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 1.0e-34 149.8 93 78.5
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 79.8
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 1.7e-34 149.1 94 78.7
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 1.7e-34 149.1 95 81.1
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 1.7e-34 149.1 94 80.9
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 2.3e-34 148.7 94 79.8
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 79.6
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.3e-34 148.7 94 79.8
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 77.4
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 77.4
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 77.4
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 78.5
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 78.5
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 2.3e-34 148.7 93 78.5
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 3.0e-34 148.3 94 77.7
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 79.8
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 79.8
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 3.9e-34 147.9 95 81.1
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 78.7
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 3.9e-34 147.9 96 80.2
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 5.0e-34 147.5 94 77.7
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 5.0e-34 147.5 94 78.7
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 5.0e-34 147.5 94 78.7
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 5.0e-34 147.5 94 77.7
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 6.6e-34 147.1 94 78.7
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 6.6e-34 147.1 94 77.7
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 6.6e-34 147.1 94 77.7
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 8.6e-34 146.7 94 76.6
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 8.6e-34 146.7 94 77.7
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 8.6e-34 146.7 94 77.7
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 8.6e-34 146.7 95 80.0
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 1.1e-33 146.4 94 78.7
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.1e-33 146.4 94 76.6
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 1.5e-33 146.0 94 76.6
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 1.5e-33 146.0 94 77.7
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 77.7
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 76.6
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 76.6
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 2.5e-33 145.2 94 76.6
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.5e-33 145.2 94 76.6
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 77.7
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 75.5
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 77.7
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 5.6e-33 144.1 94 76.6
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 5.6e-33 144.1 94 76.6
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 5.6e-33 144.1 94 76.6
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 75.5
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 75.5
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 75.5
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 75.5
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 75.5
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 76.6
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 7.3e-33 143.7 94 75.5
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 1.2e-32 142.9 81 88.9
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 75.5
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 75.5
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 75.5
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 75.5
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 75.5
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 2.8e-32 141.7 94 75.5
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 2.8e-32 141.7 94 74.5
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 3.6e-32 141.4 93 74.2
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 4.7e-32 141.0 94 72.3
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 6.2e-32 140.6 94 74.5
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 8.1e-32 140.2 93 73.1
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 1.4e-31 139.4 94 74.5
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 1.4e-31 139.4 94 74.5
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.8e-31 137.1 95 73.7
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.8e-31 137.1 95 73.7
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 8.9e-31 136.7 92 73.9
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 8.9e-31 136.7 117 65.0
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 2.0e-30 135.6 81 84.0
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 3.4e-30 134.8 95 72.6
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 7.5e-30 133.7 87 77.0
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 9.8e-30 133.3 94 68.1
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 1.7e-29 132.5 81 79.0
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 2.2e-29 132.1 88 73.9
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 4.9e-29 131.0 93 67.7
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 4.9e-29 131.0 88 73.9
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 1.9e-28 129.0 90 71.1
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 2.4e-28 128.6 91 70.3
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 2.4e-28 128.6 91 70.3
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 3.2e-28 128.3 62 96.8
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 4.1e-28 127.9 76 84.2
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 7.1e-28 127.1 62 95.2
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 7.1e-28 127.1 150 51.3
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.2e-27 126.3 91 69.2
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 1.6e-27 125.9 86 70.9
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 2.7e-27 125.2 91 68.1
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 2.7e-27 125.2 93 64.5
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 3.5e-27 124.8 93 63.4
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 6.0e-27 124.0 158 49.4
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 7.8e-27 123.6 93 64.5
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 2.3e-26 122.1 88 69.3
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 1.9e-25 119.0 69 82.6
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 7.3e-25 117.1 63 87.3
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.2e-24 116.3 63 87.3
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 2.1e-24 115.5 88 65.9
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 3.6e-24 114.8 62 88.7
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.6e-24 114.8 94 62.8
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 4.7e-24 114.4 94 62.8
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.4e-23 112.8 93 57.0
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 2.3e-23 112.1 87 64.4
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 1.2e-22 109.8 91 56.0
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 1.2e-22 109.8 93 54.8
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 2.0e-22 109.0 90 60.0
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.2e-21 105.5 93 59.1
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 1.4e-20 102.8 94 63.8
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 7.1e-20 100.5 90 61.1
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 7.1e-20 100.5 90 61.1
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 9.2e-20 100.1 95 62.1
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 6.0e-19 97.4 67 70.1
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 1.0e-18 96.7 84 61.9
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 4.0e-15 84.7 80 51.2
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 4.4e-14 81.3 65 55.4
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 1.4e-12 76.3 93 46.2
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 2.3e-10 68.9 75 45.3


User provided reference genes

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